[
Date Prev][
Date Next][
Thread Prev][
Thread Next][
Date Index][
Thread Index]
[
List Home]
|
Re: [ptp-user] Failed to parse output of OpenMPI command
|
Hey Greg,
I setup NAMD to see if I would have the same problem. I'm still
getting the same error, but I also get a little output in the PTP
Runtime perspective. Here's the debug output in context:
<stdout rank=
RTS job #50331652: "0">Info: 1 NAMD 2.7b1 Linux-x86_64 1
4pcnuggets rdt-test
</stdout>
<stdout rank="0">Inf
RTS job #50331652: o: Running on 1 processors.
</stdout>
<stdout rank="0">Info: Charm++/Converse parallel runtime
RTS job #50331652: startup completed at 0.00456786 s
</st
dout>
<stdout rank="0">Info: 1.49565 MB of memory in use
RTS job #50331652: based on CmiMemoryUsage
</stdout>
<stdout rank="0">Info: Changed directory to src
</stdou
RTS job #50331652: t>
<stdout rank="0">Info: Configuration file is alanin
</stdout>
<stdout rank="0">TCL: Suspendi
RTS job #50331652: ng until startup complete.
</stdout>
The last line of output I see in the PTP Runtime view is "Info:
Running on 1 processors."
I updated my PTP from CVS this morning and I'm still using OpenMPI 1.4a1r21763.
Matthew
On Fri, Aug 7, 2009 at 3:09 PM, Matthew Fotzler<incongruous@xxxxxxxxx> wrote:
> Greg,
>
> I'm using RSE for the connection as well as the resource manager. Is
> there anything I can do to help find the problem?
>
> Matthew
>
> On Fri, Aug 7, 2009 at 2:56 PM, Greg Watson<g.watson@xxxxxxxxxxxx> wrote:
>> Hi Matthew,
>>
>> I don't think the output you're seeing is the problem. I haven't been able
>> to reproduce it yet either.
>>
>> Are you using Remote Tools or RSE for the connection?
>>
>> Thanks,
>>
>> Greg
>>
>> On Aug 6, 2009, at 10:46 AM, Matthew Fotzler wrote:
>>
>>> Hey Greg,
>>>
>>> Sure. The output is quite large, so I hope sending as an attachment
>>> is okay. debug.log is the debug output eclipse gives me when I try to
>>> run the job through PTP, and ompi.log is the output I get when I run
>>> from a terminal.
>>>
>>> Thanks,
>>> Matthew
>>>
>>> On Wed, Aug 5, 2009 at 1:32 PM, Greg Watson<g.watson@xxxxxxxxxxxx> wrote:
>>>>
>>>> Hi Matthew,
>>>>
>>>> If there's a newline between "</std" and "out>" then it is likely to be
>>>> the
>>>> problem as XML names cannot contain whitespace. Can you send the actual
>>>> output from POP at this point?
>>>>
>>>> Thanks,
>>>>
>>>> Greg
>>>>
>>>> On Aug 5, 2009, at 12:48 PM, Matthew Fotzler wrote:
>>>>
>>>>> Hi,
>>>>>
>>>>> I'm using PTP 3.0 from CVS and OpenMPI 1.4a1r21763 (yesterday's
>>>>> nightly build). I'm trying to run the Parallel Ocean Program remotely
>>>>> and am receiving the following:
>>>>>
>>>>> org.eclipse.core.runtime.CoreException: Failed to parse output of Open
>>>>> MPI command. Check output for errors.
>>>>> at
>>>>>
>>>>> org.eclipse.ptp.rm.mpi.openmpi.core.OpenMPIPlugin.coreErrorException(OpenMPIPlugin.java:86)
>>>>> at
>>>>>
>>>>> org.eclipse.ptp.rm.mpi.openmpi.core.rtsystem.OpenMPIRuntimeSystemJob.doWaitExecution(OpenMPIRuntimeSystemJob.java:575)
>>>>> at
>>>>>
>>>>> org.eclipse.ptp.rm.core.rtsystem.AbstractToolRuntimeSystemJob.run(AbstractToolRuntimeSystemJob.java:258)
>>>>> at org.eclipse.core.internal.jobs.Worker.run(Worker.java:55)
>>>>> Caused by: java.io.IOException: The element type "stdout" must be
>>>>> terminated by the matching end-tag "</stdout>".
>>>>> at
>>>>>
>>>>> org.eclipse.ptp.rm.mpi.openmpi.core.rtsystem.OpenMPIProcessMapXml13Parser.parse(OpenMPIProcessMapXml13Parser.java:518)
>>>>> at
>>>>>
>>>>> org.eclipse.ptp.rm.mpi.openmpi.core.rtsystem.OpenMPIRuntimeSystemJob$1.run(OpenMPIRuntimeSystemJob.java:232)
>>>>>
>>>>> Looking at the debug output, I see some lines that look like:
>>>>>
>>>>> RTS job #100663327: <stdout
>>>>>
>>>>>
>>>>> rank="0">------------------------------------------------------------------------
</std
>>>>> RTS job #100663327:
>>>>>
>>>>> RTS job #100663327: out>
>>>>>
>>>>> I'm not sure if these are the culprit or not. Any ideas what might be
>>>>> causing this?
>>>>>
>>>>> Thanks,
>>>>> Matthew Fotzler
>>>>> _______________________________________________
>>>>> ptp-user mailing list
>>>>> ptp-user@xxxxxxxxxxx
>>>>> https://dev.eclipse.org/mailman/listinfo/ptp-user
>>>>
>>>> _______________________________________________
>>>> ptp-user mailing list
>>>> ptp-user@xxxxxxxxxxx
>>>> https://dev.eclipse.org/mailman/listinfo/ptp-user
>>>>
>>> <debug.log><ompi.log>_______________________________________________
>>> ptp-user mailing list
>>> ptp-user@xxxxxxxxxxx
>>> https://dev.eclipse.org/mailman/listinfo/ptp-user
>>
>> _______________________________________________
>> ptp-user mailing list
>> ptp-user@xxxxxxxxxxx
>> https://dev.eclipse.org/mailman/listinfo/ptp-user
>>
>
