Re: [ptp-user] Failed to parse output of OpenMPI command

[Matthew Fotzler <incongruous@xxxxxxxxx>]

Greg,

I'm using RSE for the connection as well as the resource manager.  Is
there anything I can do to help find the problem?

Matthew

On Fri, Aug 7, 2009 at 2:56 PM, Greg Watson<g.watson@xxxxxxxxxxxx> wrote:
> Hi Matthew,
>
> I don't think the output you're seeing is the problem. I haven't been able
> to reproduce it yet either.
>
> Are you using Remote Tools or RSE for the connection?
>
> Thanks,
>
> Greg
>
> On Aug 6, 2009, at 10:46 AM, Matthew Fotzler wrote:
>
>> Hey Greg,
>>
>> Sure.  The output is quite large, so I hope sending as an attachment
>> is okay.  debug.log is the debug output eclipse gives me when I try to
>> run the job through PTP, and ompi.log is the output I get when I run
>> from a terminal.
>>
>> Thanks,
>> Matthew
>>
>> On Wed, Aug 5, 2009 at 1:32 PM, Greg Watson<g.watson@xxxxxxxxxxxx> wrote:
>>>
>>> Hi Matthew,
>>>
>>> If there's a newline between "</std" and "out>" then it is likely to be
>>> the
>>> problem as XML names cannot contain whitespace. Can you send the actual
>>> output from POP at this point?
>>>
>>> Thanks,
>>>
>>> Greg
>>>
>>> On Aug 5, 2009, at 12:48 PM, Matthew Fotzler wrote:
>>>
>>>> Hi,
>>>>
>>>> I'm using PTP 3.0 from CVS and OpenMPI 1.4a1r21763 (yesterday's
>>>> nightly build).  I'm trying to run the Parallel Ocean Program remotely
>>>> and am receiving the following:
>>>>
>>>> org.eclipse.core.runtime.CoreException: Failed to parse output of Open
>>>> MPI command. Check output for errors.
>>>>       at
>>>>
>>>> org.eclipse.ptp.rm.mpi.openmpi.core.OpenMPIPlugin.coreErrorException(OpenMPIPlugin.java:86)
>>>>       at
>>>>
>>>> org.eclipse.ptp.rm.mpi.openmpi.core.rtsystem.OpenMPIRuntimeSystemJob.doWaitExecution(OpenMPIRuntimeSystemJob.java:575)
>>>>       at
>>>>
>>>> org.eclipse.ptp.rm.core.rtsystem.AbstractToolRuntimeSystemJob.run(AbstractToolRuntimeSystemJob.java:258)
>>>>       at org.eclipse.core.internal.jobs.Worker.run(Worker.java:55)
>>>> Caused by: java.io.IOException: The element type "stdout" must be
>>>> terminated by the matching end-tag "</stdout>".
>>>>       at
>>>>
>>>> org.eclipse.ptp.rm.mpi.openmpi.core.rtsystem.OpenMPIProcessMapXml13Parser.parse(OpenMPIProcessMapXml13Parser.java:518)
>>>>       at
>>>>
>>>> org.eclipse.ptp.rm.mpi.openmpi.core.rtsystem.OpenMPIRuntimeSystemJob$1.run(OpenMPIRuntimeSystemJob.java:232)
>>>>
>>>> Looking at the debug output, I see some lines that look like:
>>>>
>>>> RTS job #100663327: <stdout
>>>>
>>>>
>>>> rank="0">------------------------------------------------------------------------&#010;</std
>>>> RTS job #100663327:
>>>>
>>>> RTS job #100663327: out>
>>>>
>>>> I'm not sure if these are the culprit or not.  Any ideas what might be
>>>> causing this?
>>>>
>>>> Thanks,
>>>> Matthew Fotzler
>>>> _______________________________________________
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>>>
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>> <debug.log><ompi.log>_______________________________________________
>> ptp-user mailing list
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>
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