Re: [ptp-user] Failed to parse output of OpenMPI command

[Matthew Fotzler <incongruous@xxxxxxxxx>]

Hey Greg,

Sure.  The output is quite large, so I hope sending as an attachment
is okay.  debug.log is the debug output eclipse gives me when I try to
run the job through PTP, and ompi.log is the output I get when I run
from a terminal.

Thanks,
Matthew

On Wed, Aug 5, 2009 at 1:32 PM, Greg Watson<g.watson@xxxxxxxxxxxx> wrote:
> Hi Matthew,
>
> If there's a newline between "</std" and "out>" then it is likely to be the
> problem as XML names cannot contain whitespace. Can you send the actual
> output from POP at this point?
>
> Thanks,
>
> Greg
>
> On Aug 5, 2009, at 12:48 PM, Matthew Fotzler wrote:
>
>> Hi,
>>
>> I'm using PTP 3.0 from CVS and OpenMPI 1.4a1r21763 (yesterday's
>> nightly build).  I'm trying to run the Parallel Ocean Program remotely
>> and am receiving the following:
>>
>> org.eclipse.core.runtime.CoreException: Failed to parse output of Open
>> MPI command. Check output for errors.
>>        at
>> org.eclipse.ptp.rm.mpi.openmpi.core.OpenMPIPlugin.coreErrorException(OpenMPIPlugin.java:86)
>>        at
>> org.eclipse.ptp.rm.mpi.openmpi.core.rtsystem.OpenMPIRuntimeSystemJob.doWaitExecution(OpenMPIRuntimeSystemJob.java:575)
>>        at
>> org.eclipse.ptp.rm.core.rtsystem.AbstractToolRuntimeSystemJob.run(AbstractToolRuntimeSystemJob.java:258)
>>        at org.eclipse.core.internal.jobs.Worker.run(Worker.java:55)
>> Caused by: java.io.IOException: The element type "stdout" must be
>> terminated by the matching end-tag "</stdout>".
>>        at
>> org.eclipse.ptp.rm.mpi.openmpi.core.rtsystem.OpenMPIProcessMapXml13Parser.parse(OpenMPIProcessMapXml13Parser.java:518)
>>        at
>> org.eclipse.ptp.rm.mpi.openmpi.core.rtsystem.OpenMPIRuntimeSystemJob$1.run(OpenMPIRuntimeSystemJob.java:232)
>>
>> Looking at the debug output, I see some lines that look like:
>>
>> RTS job #100663327: <stdout
>>
>> rank="0">------------------------------------------------------------------------&#010;</std
>> RTS job #100663327:
>>
>> RTS job #100663327: out>
>>
>> I'm not sure if these are the culprit or not.  Any ideas what might be
>> causing this?
>>
>> Thanks,
>> Matthew Fotzler
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Attachment: debug.log
Description: Binary data

Attachment: ompi.log
Description: Binary data