Re: [ptp-user] Failed to parse output of OpenMPI command

[Greg Watson <g.watson@xxxxxxxxxxxx>]

Hi Matthew,

I don't think the output you're seeing is the problem. I haven't been  
able to reproduce it yet either.

Are you using Remote Tools or RSE for the connection?

Thanks,

Greg

On Aug 6, 2009, at 10:46 AM, Matthew Fotzler wrote:

> Hey Greg,
>
> Sure.  The output is quite large, so I hope sending as an attachment
> is okay.  debug.log is the debug output eclipse gives me when I try to
> run the job through PTP, and ompi.log is the output I get when I run
> from a terminal.
>
> Thanks,
> Matthew
>
> On Wed, Aug 5, 2009 at 1:32 PM, Greg Watson<g.watson@xxxxxxxxxxxx>  
> wrote:
> > Hi Matthew,
> >
> > If there's a newline between "</std" and "out>" then it is likely  
> > to be the
> > problem as XML names cannot contain whitespace. Can you send the  
> > actual
> > output from POP at this point?
> >
> > Thanks,
> >
> > Greg
> >
> > On Aug 5, 2009, at 12:48 PM, Matthew Fotzler wrote:
> >
> > > Hi,
> > >
> > > I'm using PTP 3.0 from CVS and OpenMPI 1.4a1r21763 (yesterday's
> > > nightly build).  I'm trying to run the Parallel Ocean Program  
> > > remotely
> > > and am receiving the following:
> > >
> > > org.eclipse.core.runtime.CoreException: Failed to parse output of  
> > > Open
> > > MPI command. Check output for errors.
> > >        at
> > > org 
> > > .eclipse 
> > > .ptp 
> > > .rm 
> > > .mpi 
> > > .openmpi.core.OpenMPIPlugin.coreErrorException(OpenMPIPlugin.java: 
> > > 86)
> > >        at
> > > org 
> > > .eclipse 
> > > .ptp 
> > > .rm 
> > > .mpi 
> > > .openmpi 
> > > .core 
> > > .rtsystem 
> > > .OpenMPIRuntimeSystemJob 
> > > .doWaitExecution(OpenMPIRuntimeSystemJob.java:575)
> > >        at
> > > org 
> > > .eclipse 
> > > .ptp 
> > > .rm 
> > > .core 
> > > .rtsystem 
> > > .AbstractToolRuntimeSystemJob 
> > > .run(AbstractToolRuntimeSystemJob.java:258)
> > >        at org.eclipse.core.internal.jobs.Worker.run(Worker.java:55)
> > > Caused by: java.io.IOException: The element type "stdout" must be
> > > terminated by the matching end-tag "</stdout>".
> > >        at
> > > org 
> > > .eclipse 
> > > .ptp 
> > > .rm 
> > > .mpi 
> > > .openmpi 
> > > .core 
> > > .rtsystem 
> > > .OpenMPIProcessMapXml13Parser 
> > > .parse(OpenMPIProcessMapXml13Parser.java:518)
> > >        at
> > > org 
> > > .eclipse.ptp.rm.mpi.openmpi.core.rtsystem.OpenMPIRuntimeSystemJob 
> > > $1.run(OpenMPIRuntimeSystemJob.java:232)
> > >
> > > Looking at the debug output, I see some lines that look like:
> > >
> > > RTS job #100663327: <stdout
> > >
> > > rank 
> > > = 
> > > "0 
> > > "> 
> > > ------------------------------------------------------------------------&#010 
> > > ;</std
> > > RTS job #100663327:
> > >
> > > RTS job #100663327: out>
> > >
> > > I'm not sure if these are the culprit or not.  Any ideas what  
> > > might be
> > > causing this?
> > >
> > > Thanks,
> > > Matthew Fotzler
> > > _______________________________________________
> > > ptp-user mailing list
> > > ptp-user@xxxxxxxxxxx
> > > https://dev.eclipse.org/mailman/listinfo/ptp-user
> >
> > _______________________________________________
> > ptp-user mailing list
> > ptp-user@xxxxxxxxxxx
> > https://dev.eclipse.org/mailman/listinfo/ptp-user
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