Re: [ptp-user] PTP/ETFw

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Re: [ptp-user] PTP/ETFw

From: Xavier Pegenaute <xavier.pegenaute@xxxxxx>
Date: Tue, 21 Jul 2009 12:19:43 +0200
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Hi,


thanks, with your comments I am able to get previous values from togoption.

Now I know how I want to integrate as a first stage our tools with ptp. But I 
had some problem.

An example xml file is attached to this mail, and trying to profiling with open 
mpi, I found the error shown in the log (also attached), but:
- The instrumented binary has been executed (because I am able to see the 
trace files)
- The xeyes program is also executed.

I have been trying to remove and combine entries in the xml file but I have not 
been able to know where is exactly the problem. Hope to be enough for you.


Thanks a lot!.
Xavi.

!SESSION 2009-07-21 12:10:24.366 -----------------------------------------------
eclipse.buildId=I20090611-1540
java.version=1.6.0_0
java.vendor=Sun Microsystems Inc.
BootLoader constants: OS=linux, ARCH=x86, WS=gtk, NL=en_US
Command-line arguments:  -os linux -ws gtk -arch x86

!ENTRY org.eclipse.osgi 2 1 2009-07-21 12:11:07.600
!MESSAGE NLS unused message: DownloadBackAction_FailedFetchRemoteProperties in: org.eclipse.ptp.launch.messages.messages

!ENTRY org.eclipse.osgi 2 0 2009-07-21 12:11:13.148
!MESSAGE While loading class "org.eclipse.rse.ui.SystemPreferencesManager$ModelChangeListener", thread "Thread[Worker-1,5,main]" timed out waiting (5000ms) for thread "Thread[Worker-4,5,main]" to finish starting bundle "org.eclipse.rse.ui_3.1.0.v200905272300 [258]". To avoid deadlock, thread "Thread[Worker-1,5,main]" is proceeding but "org.eclipse.rse.ui.SystemPreferencesManager$ModelChangeListener" may not be fully initialized.
!STACK 0
org.osgi.framework.BundleException: State change in progress for bundle "reference:file:plugins/org.eclipse.rse.ui_3.1.0.v200905272300.jar" by thread "Worker-4".
	at org.eclipse.osgi.framework.internal.core.AbstractBundle.beginStateChange(AbstractBundle.java:1073)
	at org.eclipse.osgi.framework.internal.core.AbstractBundle.start(AbstractBundle.java:278)
	at org.eclipse.osgi.framework.util.SecureAction.start(SecureAction.java:408)
	at org.eclipse.core.runtime.internal.adaptor.EclipseLazyStarter.postFindLocalClass(EclipseLazyStarter.java:111)
	at org.eclipse.osgi.baseadaptor.loader.ClasspathManager.findLocalClass(ClasspathManager.java:449)
	at org.eclipse.osgi.internal.baseadaptor.DefaultClassLoader.findLocalClass(DefaultClassLoader.java:211)
	at org.eclipse.osgi.internal.loader.BundleLoader.findLocalClass(BundleLoader.java:376)
	at org.eclipse.osgi.internal.loader.BundleLoader.findClassInternal(BundleLoader.java:452)
	at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:405)
	at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:393)
	at org.eclipse.osgi.internal.baseadaptor.DefaultClassLoader.loadClass(DefaultClassLoader.java:105)
	at java.lang.ClassLoader.loadClass(ClassLoader.java:268)
	at java.lang.ClassLoader.loadClassInternal(ClassLoader.java:336)
	at org.eclipse.rse.ui.SystemPreferencesManager$1.run(SystemPreferencesManager.java:510)
	at org.eclipse.core.internal.jobs.Worker.run(Worker.java:55)
Caused by: org.eclipse.osgi.framework.internal.core.AbstractBundle$BundleStatusException
	... 15 more
Root exception:
org.eclipse.osgi.framework.internal.core.AbstractBundle$BundleStatusException
	at org.eclipse.osgi.framework.internal.core.AbstractBundle.beginStateChange(AbstractBundle.java:1073)
	at org.eclipse.osgi.framework.internal.core.AbstractBundle.start(AbstractBundle.java:278)
	at org.eclipse.osgi.framework.util.SecureAction.start(SecureAction.java:408)
	at org.eclipse.core.runtime.internal.adaptor.EclipseLazyStarter.postFindLocalClass(EclipseLazyStarter.java:111)
	at org.eclipse.osgi.baseadaptor.loader.ClasspathManager.findLocalClass(ClasspathManager.java:449)
	at org.eclipse.osgi.internal.baseadaptor.DefaultClassLoader.findLocalClass(DefaultClassLoader.java:211)
	at org.eclipse.osgi.internal.loader.BundleLoader.findLocalClass(BundleLoader.java:376)
	at org.eclipse.osgi.internal.loader.BundleLoader.findClassInternal(BundleLoader.java:452)
	at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:405)
	at org.eclipse.osgi.internal.loader.BundleLoader.findClass(BundleLoader.java:393)
	at org.eclipse.osgi.internal.baseadaptor.DefaultClassLoader.loadClass(DefaultClassLoader.java:105)
	at java.lang.ClassLoader.loadClass(ClassLoader.java:268)
	at java.lang.ClassLoader.loadClassInternal(ClassLoader.java:336)
	at org.eclipse.rse.ui.SystemPreferencesManager$1.run(SystemPreferencesManager.java:510)
	at org.eclipse.core.internal.jobs.Worker.run(Worker.java:55)

!ENTRY org.eclipse.rse.tests 2 0 2009-07-21 12:11:13.448
!MESSAGE testing warnings generated during RSE initialization

!ENTRY org.eclipse.ptp.core 4 4 2009-07-21 12:11:53.396
!MESSAGE Internal Error
!STACK 0
java.io.IOException: Read end dead
	at java.io.PipedInputStream.checkStateForReceive(PipedInputStream.java:263)
	at java.io.PipedInputStream.receive(PipedInputStream.java:227)
	at java.io.PipedOutputStream.write(PipedOutputStream.java:149)
	at org.eclipse.ptp.rm.core.utils.InputStreamListenerToOutputStream.newBytes(InputStreamListenerToOutputStream.java:35)
	at org.eclipse.ptp.rm.core.utils.InputStreamObserver.newBytes(InputStreamObserver.java:127)
	at org.eclipse.ptp.rm.core.utils.InputStreamObserver.run(InputStreamObserver.java:146)

!ENTRY org.eclipse.ptp.rm.core 4 0 2009-07-21 12:11:53.615
!MESSAGE Failed while executing parallel application.
!STACK 1
org.eclipse.core.runtime.CoreException: Failed to parse output of Open MPI command. Check output for errors.
	at org.eclipse.ptp.rm.mpi.openmpi.core.OpenMPIPlugin.coreErrorException(OpenMPIPlugin.java:86)
	at org.eclipse.ptp.rm.mpi.openmpi.core.rtsystem.OpenMPIRuntimeSystemJob.doWaitExecution(OpenMPIRuntimeSystemJob.java:591)
	at org.eclipse.ptp.rm.core.rtsystem.AbstractToolRuntimeSystemJob.run(AbstractToolRuntimeSystemJob.java:258)
	at org.eclipse.core.internal.jobs.Worker.run(Worker.java:55)
Caused by: java.io.IOException: Unknown XML element: initial-mode
	at org.eclipse.ptp.rm.mpi.openmpi.core.rtsystem.OpenMPIProcessMapXml13Parser.parse(OpenMPIProcessMapXml13Parser.java:518)
	at org.eclipse.ptp.rm.mpi.openmpi.core.rtsystem.OpenMPIRuntimeSystemJob$1.run(OpenMPIRuntimeSystemJob.java:231)
!SUBENTRY 1 org.eclipse.ptp.rm.core 4 0 2009-07-21 12:11:53.616
!MESSAGE Failed to parse output of Open MPI command. Check output for errors.
!STACK 0
java.io.IOException: Unknown XML element: initial-mode
	at org.eclipse.ptp.rm.mpi.openmpi.core.rtsystem.OpenMPIProcessMapXml13Parser.parse(OpenMPIProcessMapXml13Parser.java:518)
	at org.eclipse.ptp.rm.mpi.openmpi.core.rtsystem.OpenMPIRuntimeSystemJob$1.run(OpenMPIRuntimeSystemJob.java:231)

Attachment: tool.xml
Description: XML document

Follow-Ups:
- Re: [ptp-user] PTP/ETFw
  - From: Wyatt Spear

References:
- [ptp-user] PTP/ETFw
  - From: Xavier Pegenaute
- Re: [ptp-user] PTP/ETFw
  - From: Wyatt Spear
- Re: [ptp-user] PTP/ETFw
  - From: Wyatt Spear

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