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Eclipse is clearly capable of generating a patch file which consists of several patches - it does so if you create a patch against a directory, for instance. When the remote link is relatively slow and you *know* which resources you've changed, it would be nice to be able to select all of them and then select Team > Create Patch. (Apologies if this is already in 3.0.)
*** This bug has been marked as a duplicate of 41340 ***