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Re: #4: Re: [ptp-user] How do I set up a machine set?
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Greg,
Here are a couple of observations:
1. The nodes were initially on "idle" (allocated to me, etc.), then they
turned to "job running" when I started a job, and to "job stopped" at
the end of the job. This worked fine, and I could see which nodes the
job was running on.
However, when I turned off precisely the nodes the job had run on and
restarted that same job, not only did those nodes not change their
status from "job stopped" to "down" (nor to anything else), but the job
itself (the icons) showed up as "exited normally", even though the
"Process details" window showed "Node: N/A" and no program output.
2. The MPI Artifacts/Run MPI Analysis doesn't seem to find any such
artifacts in my MPI program.
Apart from these teething problems (and whatever else may be lurking out
there), this is very nice work!
-Tudor
On Thu, 2007-08-16 at 12:13 -0400, Greg Watson wrote:
> Tudor,
>
> Has the node icon changed to 'down'? If so, then it sounds like it
> may be a bug.
>
> Otherwise, the node state, and consequently what is displayed in the
> view, depends on the events OMPI sends, so it's possible that OMPI is
> not detecting the node is down. There are definitely some issues with
> the way OMPI detects these kinds of things.
>
> Greg
>
> On Aug 16, 2007, at 11:09 AM, Tudor Buican wrote:
>
> > Greg,
> >
> > I have OpenMPI 1.2 running, with devel-headers, etc. PTP seems to be
> > running nicely, and I was able to build and run parallel jobs on my
> > cluster through it. It also shows the machines and the jobs on the
> > cluster.
> >
> > One quick question, though: The "Node Info" display doesn't seem
> > to get
> > updated and it claims that nodes that I had turned off in the meantime
> > are still "up". Is this how it should be?
> >
> > Thanks again,
> > -Tudor
> >
> >
> > On Thu, 2007-08-09 at 17:14 -0400, Greg Watson wrote:
> >> The quick answer is I don't know, but it would be worth a try though.
> >> Once you've installed the RPM, check in the <install_dir>/include/
> >> openmpi directory. If there are sub-directories opal, orte and ompi
> >> that have lots of header files in them, then you're probably ok. You
> >> could then try re-running the BUILD script an make sure that the
> >> build goes ok. Let me know if you have problems.
> >>
> >> Greg
> >>
> >> On Aug 9, 2007, at 5:06 PM, Tudor Buican wrote:
> >>
> >>> Greg,
> >>>
> >>> I have one quick question: if I install the rpm's openmpi-runtime
> >>> and
> >>> openmpi-devel, would that be equivalent to building and installing
> >>> openmpi from the tarball with the -with-devel-headers option?
> >>>
> >>> Thanks again,
> >>> -Tudor
> >>>
> >>> On Thu, 2007-08-09 at 10:25 -0400, Greg Watson wrote:
> >>>> Tudor,
> >>>>
> >>>> Did you install OpenMPI yourself, or are you using a pre-installed
> >>>> version? The fact that 'openMPI is all over the place' makes me
> >>>> suspect you're using a pre-installed version. PTP only works with
> >>>> version 1.2 of OpenMPI, so that's the first thing to check. When
> >>>> OpenMPI is built for your platform, it *must* have been configured
> >>>> with the '--with-devel-headers' flag or it will not work with PTP.
> >>>> This is documented in the PTP release notes here: http://
> >>>> www.eclipse.org/ptp/docs/releases/release-1.1.php. The PTP
> >>>> manual is
> >>>> available from the Eclipse built-in help, or here: http://
> >>>> www.eclipse.org/ptp/doc.php.
> >>>>
> >>>> Greg
> >>>>
> >>>> On Aug 9, 2007, at 9:55 AM, Tudor Buican wrote:
> >>>>
> >>>>> Good morning.
> >>>>>
> >>>>> As it turns out, openmpi-default-hostfile was hiding in plain
> >>>>> sight
> >>>>> in /etc. I put in the node names, etc., and mpirun, for example,
> >>>>> sees
> >>>>> them and uses them by default. However, Eclipse/PTP still
> >>>>> doesn't, and
> >>>>> displays only one node with no information.
> >>>>>
> >>>>> Here's what shows up on the console when I start eclipse (in
> >>>>> the PTP
> >>>>> Runtime perspective):
> >>>>>
> >>>>> ............................................
> >>>>> [tudor@herd-0 ~]$ eclipse&
> >>>>> [tudor@herd-0 ~]$ In getResourceManagerFactories
> >>>>> retrieved factory: Simulation,
> >>>>> org.eclipse.ptp.simulation.core.resourcemanager
> >>>>> leaving getResourceManagerFactories
> >>>>> Your Control System Choice: '<UNDEFINED CS>'
> >>>>> Your Monitoring System Choice: '<UNDEFINED MS>'
> >>>>> No previous (or invalid) control or monitoring system selected.
> >>>>>
> >>>>> Default systems set to Open Runtime Environment (ORTE). To
> >>>>> change,
> >>>>> use
> >>>>> the Window->Preferences->PTP preferences page.
> >>>>> Your Default Control System Choice: 'Open Runtime Environment
> >>>>> (ORTE)'
> >>>>> Your Default Monitoring System Choice: 'Open Runtime Environment
> >>>>> (ORTE)'
> >>>>> In retrieveConfigurationWizardPageFactories
> >>>>> wizard page factory:
> >>>>> org.eclipse.ptp.simulation.ui.wizards.SimulationRMConfigurationWiz
> >>>>> ar
> >>>>> dP
> >>>>> ageFactory@39e2ee3f for class: class
> >>>>> org.eclipse.ptp.rmsystem.SimulationResourceManagerFactory
> >>>>> leaving retrieveConfigurationWizardPageFactories
> >>>>> XXXXXXXXXXX refreshRuntimeSystems(false), isInitialized():false
> >>>>> XXXXXXXXXXX refreshRuntimeSystems calling initialize(),
> >>>>> force:false,
> >>>>> isInitialized():false
> >>>>> refreshRuntimeSystems
> >>>>> SHUTTING DOWN CONTROL/MONITORING/PROXY systems where appropriate
> >>>>> User selected 1 simulated machines.
> >>>>> SimPreferences: Machine 0 = 1 nodes
> >>>>> ModelManager.runtimeNodeGeneralName - #keys = 2, #values = 2
> >>>>> Unknown machine ID (machine0), adding to the
> >>>>> model.
> >>>>> Unknown node number (0), adding to the model.
> >>>>> ...........................................
> >>>>>
> >>>>> Do you have any idea what it is that I'm doing wrong?
> >>>>>
> >>>>> Thank you so much for the help.
> >>>>> -Tudor
> >>>>>
> >>>>>
> >>>>> On Wed, 2007-08-08 at 14:12 -0400, Beth Tibbitts wrote:
> >>>>>> The hostfile you want is located here:
> >>>>>>
> >>>>>> <openmpi-install-dir> e.g. /usr/local -- wherever you installed
> >>>>>> OpenMPI
> >>>>>> <openmpi-install-dir>/etc/openmpi-default-hostfile
> >>>>>>
> >>>>>> ...Beth
> >>>>>>
> >>>>>> Beth Tibbitts (859) 243-4981 (TL 545-4981)
> >>>>>> High Productivity Tools / Parallel Tools http://eclipse.org/ptp
> >>>>>> IBM T.J.Watson Research Center
> >>>>>> Mailing Address: IBM Corp., 455 Park Place, Lexington, KY 40511
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>> Tudor Buican
> >>>>>> <tudor@xxxxxxxx>
> >>>>>> Sent
> >>>>>> by: To
> >>>>>> ptp-user-bounces@ PTP User list
> >>>>>> eclipse.org <ptp-user@xxxxxxxxxxx>
> >>>>>>
> >>>>>> cc
> >>>>>>
> >>>>>> 08/08/2007 01:26
> >>>>>> Subject
> >>>>>> PM Re: [ptp-user] How do I
> >>>>>> set
> >>>>>> up a
> >>>>>> machine set?
> >>>>>>
> >>>>>> Please respond to
> >>>>>> PTP User list
> >>>>>> <ptp-user@eclipse
> >>>>>> .org>
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>>
> >>>>>> Thank you. All I have is a file I created in my home directory
> >>>>>> which
> >>>>>> lists the machines in the cluster and which I give as a parameter
> >>>>>> to the
> >>>>>> -machinefile option when I call, say, mpirun under openMPI. Is
> >>>>>> there any
> >>>>>> way of pointing PTP to that file? I can't find any file called
> >>>>>> openmpi-
> >>>>>> default-hostfile, nor any "etc" directory associated with the
> >>>>>> openMPI
> >>>>>> installation (I assume that's what Greg had in mind).
> >>>>>>
> >>>>>> Also, is there any document that could be used as a PTP manual? I
> >>>>>> have
> >>>>>> in mind something covering small but essential issues such as
> >>>>>> this
> >>>>>> one.
> >>>>>>
> >>>>>> Thanks again,
> >>>>>> -Tudor
> >>>>>>
> >>>>>> On Wed, 2007-08-08 at 12:51 -0400, Beth Tibbitts wrote:
> >>>>>>> See this:
> >>>>>>> http://dev.eclipse.org/mhonarc/lists/ptp-user/msg00192.html
> >>>>>>>
> >>>>>>> ...Beth
> >>>>>>>
> >>>>>>> Beth Tibbitts (859) 243-4981 (TL 545-4981)
> >>>>>>> High Productivity Tools / Parallel Tools http://eclipse.org/ptp
> >>>>>>> IBM T.J.Watson Research Center
> >>>>>>> Mailing Address: IBM Corp., 455 Park Place, Lexington, KY 40511
> >>>>>>>
> >>>>>>>
> >>>>>>>
> >>>>>>
> >>>>>>> Tudor Buican
> >>>>>>
> >>>>>>> <tudor@xxxxxxxx>
> >>>>>>
> >>>>>>> Sent by:
> >>>>>> To
> >>>>>>> ptp-user-bounces@ ptp-user@xxxxxxxxxxx
> >>>>>>
> >>>>>>> eclipse.org
> >>>>>> cc
> >>>>>>>
> >>>>>>
> >>>>>>>
> >>>>>> Subject
> >>>>>>> 08/08/2007 12:44 [ptp-user] How do I set
> >>>>>>> up a
> >>>>>>
> >>>>>>> PM machine set?
> >>>>>>
> >>>>>>>
> >>>>>>
> >>>>>>>
> >>>>>>
> >>>>>>> Please respond to
> >>>>>>
> >>>>>>> PTP User list
> >>>>>>
> >>>>>>> <ptp-user@eclipse
> >>>>>>
> >>>>>>> .org>
> >>>>>>
> >>>>>>>
> >>>>>>
> >>>>>>>
> >>>>>>
> >>>>>>>
> >>>>>>>
> >>>>>>>
> >>>>>>>
> >>>>>>> Hi.
> >>>>>>>
> >>>>>>> I've just installed Eclipse and PTP and I can get the PTP
> >>>>>>> Runtime
> >>>>>>> perspective. However, the "Machines" view only shows one machine
> >>>>>>> with a
> >>>>>>> question mark on it, and I can't find any way of setting up a
> >>>>>>> set of
> >>>>>>> machines. Nor can I find a manual for PTP.
> >>>>>>>
> >>>>>>> I'm running Eclipse/PTP on the head node of a five-node Rocks
> >>>>>>> 4.3
> >>>>>>> cluster, with openMPI enabled by default.
> >>>>>>>
> >>>>>>> Any help would be greatly appreciated.
> >>>>>>>
> >>>>>>> Thank you.
> >>>>>>> -Tudor
> >>>>>>> --
> >>>>>>> Tudor N. Buican, PhD
> >>>>>>> Managing Member
> >>>>>>> SEA LLC
> >>>>>>> phone: 505-271-9925, 505-818-7303
> >>>>>>> fax: 505-271-9925
> >>>>>>> email: tudor@xxxxxxxx
> >>>>>>>
> >>>>>>>
> >>>>>>> _______________________________________________
> >>>>>>> ptp-user mailing list
> >>>>>>> ptp-user@xxxxxxxxxxx
> >>>>>>> https://dev.eclipse.org/mailman/listinfo/ptp-user
> >>>>>>>
> >>>>>>>
> >>>>>>> _______________________________________________
> >>>>>>> ptp-user mailing list
> >>>>>>> ptp-user@xxxxxxxxxxx
> >>>>>>> https://dev.eclipse.org/mailman/listinfo/ptp-user
> >>>>>>>
> >>>>>> --
> >>>>>> Tudor Buican <tudor@xxxxxxxx>
> >>>>>>
> >>>>>>
> >>>>>> _______________________________________________
> >>>>>> ptp-user mailing list
> >>>>>> ptp-user@xxxxxxxxxxx
> >>>>>> https://dev.eclipse.org/mailman/listinfo/ptp-user
> >>>>>>
> >>>>>>
> >>>>>> _______________________________________________
> >>>>>> ptp-user mailing list
> >>>>>> ptp-user@xxxxxxxxxxx
> >>>>>> https://dev.eclipse.org/mailman/listinfo/ptp-user
> >>>>>
> >>>>> --
> >>>>> Tudor N. Buican, PhD
> >>>>> Managing Member
> >>>>> SEA LLC
> >>>>> phone: 505-271-9925, 505-818-7303
> >>>>> fax: 505-271-9925
> >>>>> email: tudor@xxxxxxxx
> >>>>>
> >>>>>
> >>>>> _______________________________________________
> >>>>> ptp-user mailing list
> >>>>> ptp-user@xxxxxxxxxxx
> >>>>> https://dev.eclipse.org/mailman/listinfo/ptp-user
> >>>>>
> >>>>
> >>>> _______________________________________________
> >>>> ptp-user mailing list
> >>>> ptp-user@xxxxxxxxxxx
> >>>> https://dev.eclipse.org/mailman/listinfo/ptp-user
> >>>>
> >>> --
> >>> Tudor Buican <tudor@xxxxxxxx>
> >>>
> >>>
> >>> _______________________________________________
> >>> ptp-user mailing list
> >>> ptp-user@xxxxxxxxxxx
> >>> https://dev.eclipse.org/mailman/listinfo/ptp-user
> >>>
> >>
> >> _______________________________________________
> >> ptp-user mailing list
> >> ptp-user@xxxxxxxxxxx
> >> https://dev.eclipse.org/mailman/listinfo/ptp-user
> >>
> > --
> > Tudor Buican <tudor@xxxxxxxx>
> >
> >
> > _______________________________________________
> > ptp-user mailing list
> > ptp-user@xxxxxxxxxxx
> > https://dev.eclipse.org/mailman/listinfo/ptp-user
> >
>
> _______________________________________________
> ptp-user mailing list
> ptp-user@xxxxxxxxxxx
> https://dev.eclipse.org/mailman/listinfo/ptp-user
>
--
Tudor Buican <tudor@xxxxxxxx>
