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Re: [ptp-dev] IOException Pipe closed 
Hi Matthew,
Please make sure there are no plugins from older builds in your eclipse plugins folder. Also, I'd suggest starting with a clean workspace and creating a new resource manager.
If neither of those things work, please create the file "<install_dir>/ eclipse/Eclipse.app/Contents/MacOS/.options" with the lines: 

org.eclipse.ptp.rm.core/debug=true
org.eclipse.ptp.rm.core/debug/rts=true
org.eclipse.ptp.rm.core/debug/rts/job/output=true
Then launch Eclipse from the command line with the -debug flag (i.e. <install_dir>/eclipse/eclipse -debug).
When you run the application, you should see output from Eclipse on stdout. Please send that to me. 

Regards,
Greg



On Jul 15, 2009, at 4:08 PM, Matthew Fotzler wrote:


Greg,

I tried the 200907131120 build and experienced the same problem.  Is
there a different build I should try?

Thanks,
Matthew
On Wed, Jul 15, 2009 at 2:22 PM, Greg Watson<g.watson@xxxxxxxxxxxx> wrote: 
Matthew,
Which build of PTP 3.0 are you using?Please try the latest and let me know 
if that fixes the problem.

Regards,
Greg
On Jul 15, 2009, at 3:15 PM, Matthew Fotzler <incongruous@xxxxxxxxx> wrote: 


Hi Greg,

Thank you for your help.  I updated to OpenMPI 1.3.3, but I am now
receiving a different error.  Do you have any ideas what might be
causing this?
org.eclipse.core.runtime.CoreException: Failed to parse output of Open 
MPI command. Check output for errors.
  at
org .eclipse .ptp .rm .mpi .openmpi.core.OpenMPIPlugin.coreErrorException(OpenMPIPlugin.java: 86) 
  at
org .eclipse .ptp .rm .mpi .openmpi .core .rtsystem .OpenMPIRuntimeSystemJob .doWaitExecution(OpenMPIRuntimeSystemJob.java:591) 
  at
org .eclipse .ptp .rm .core .rtsystem .AbstractToolRuntimeSystemJob .run(AbstractToolRuntimeSystemJob.java:258) 
  at org.eclipse.core.internal.jobs.Worker.run(Worker.java:55)
Caused by: java.io.IOException: Unknown XML element: stdout
  at
org .eclipse .ptp .rm .mpi .openmpi .core .rtsystem .OpenMPIProcessMapXml13Parser .parse(OpenMPIProcessMapXml13Parser.java:518) 
  at
org .eclipse.ptp.rm.mpi.openmpi.core.rtsystem.OpenMPIRuntimeSystemJob $1.run(OpenMPIRuntimeSystemJob.java:231) 


java.io.IOException: Pipe closed
  at
java .io.PipedInputStream.checkStateForReceive(PipedInputStream.java:190) 
  at java.io.PipedInputStream.receive(PipedInputStream.java:156)
  at java.io.PipedOutputStream.write(PipedOutputStream.java:129)
  at
org .eclipse .ptp .rm .core .utils .InputStreamListenerToOutputStream .newBytes(InputStreamListenerToOutputStream.java:35) 
  at
org .eclipse .ptp .rm .core.utils.InputStreamObserver.newBytes(InputStreamObserver.java: 127) 
  at
org .eclipse .ptp .rm.core.utils.InputStreamObserver.run(InputStreamObserver.java:146) 


Matthew Fotzler

On Wed, Jul 15, 2009 at 10:31 AM, Greg Watson<g.watson@xxxxxxxxxxxx>
wrote:


Hi Matthew,
Which version of Open MPI 1.3 do you have installed? Older versions cause 
a
problem if the program output contains a "<" or "&" character which
confuse
the XML parser. A fix for this is in 1.3.3 and later.

Regards,
Greg

On Jul 14, 2009, at 12:39 PM, Matthew Fotzler wrote:


Hi,
I'm trying to run Parallel Ocean Program with PTP HEAD. I'm receiving 
an "Internal Error" part way through execution.  I'm getting some
console output, but not all of it.  Then the process is terminated
abruptly and there are 2 errors logged.
org.eclipse.core.runtime.CoreException: Failed to parse output of Open 
MPI command. Check output for errors.
      at
org .eclipse .ptp .rm .mpi .openmpi .core.OpenMPIPlugin.coreErrorException(OpenMPIPlugin.java:86) 
      at
org .eclipse .ptp .rm .mpi .openmpi .core .rtsystem .OpenMPIRuntimeSystemJob .doWaitExecution(OpenMPIRuntimeSystemJob.java:591) 
      at
org .eclipse .ptp .rm .core .rtsystem .AbstractToolRuntimeSystemJob .run(AbstractToolRuntimeSystemJob.java:258) 
      at org.eclipse.core.internal.jobs.Worker.run(Worker.java:55)
Caused by: java.io.IOException: The content of elements must consist 
of well-formed character data or markup.
      at
org .eclipse .ptp .rm .mpi .openmpi .core .rtsystem .OpenMPIProcessMapXml13Parser .parse(OpenMPIProcessMapXml13Parser.java:518) 
      at
org .eclipse.ptp.rm.mpi.openmpi.core.rtsystem.OpenMPIRuntimeSystemJob $1.run(OpenMPIRuntimeSystemJob.java:231) 


java.io.IOException: Pipe closed
at
java .io.PipedInputStream.checkStateForReceive(PipedInputStream.java: 190) 
at java.io.PipedInputStream.receive(PipedInputStream.java:156)
at java.io.PipedOutputStream.write(PipedOutputStream.java:129)
at
org .eclipse .ptp .rm .core .utils .InputStreamListenerToOutputStream .newBytes(InputStreamListenerToOutputStream.java:35) 
at
org .eclipse .ptp .rm .core .utils.InputStreamObserver.newBytes(InputStreamObserver.java:127) 
at
org .eclipse .ptp .rm.core.utils.InputStreamObserver.run(InputStreamObserver.java: 146) 

This is my session data:
eclipse.buildId=I20090611-1540
java.version=1.5.0_19
java.vendor=Apple Inc.
BootLoader constants: OS=macosx, ARCH=x86, WS=cocoa, NL=en_US
Framework arguments:  -product org.eclipse.sdk.ide

Thanks for your help!
Matthew Fotzler (UIUC)
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