Re: [ptp-dev] IOException Pipe closed

[Matthew Fotzler <incongruous@xxxxxxxxx>]

Greg,

I tried the 200907131120 build and experienced the same problem.  Is
there a different build I should try?

Thanks,
Matthew

On Wed, Jul 15, 2009 at 2:22 PM, Greg Watson<g.watson@xxxxxxxxxxxx> wrote:
> Matthew,
>
> Which build of PTP 3.0 are you using?Please try the latest and let me know
> if that fixes the problem.
>
> Regards,
> Greg
>
> On Jul 15, 2009, at 3:15 PM, Matthew Fotzler <incongruous@xxxxxxxxx> wrote:
>
>> Hi Greg,
>>
>> Thank you for your help.  I updated to OpenMPI 1.3.3, but I am now
>> receiving a different error.  Do you have any ideas what might be
>> causing this?
>>
>> org.eclipse.core.runtime.CoreException: Failed to parse output of Open
>> MPI command. Check output for errors.
>>   at
>> org.eclipse.ptp.rm.mpi.openmpi.core.OpenMPIPlugin.coreErrorException(OpenMPIPlugin.java:86)
>>   at
>> org.eclipse.ptp.rm.mpi.openmpi.core.rtsystem.OpenMPIRuntimeSystemJob.doWaitExecution(OpenMPIRuntimeSystemJob.java:591)
>>   at
>> org.eclipse.ptp.rm.core.rtsystem.AbstractToolRuntimeSystemJob.run(AbstractToolRuntimeSystemJob.java:258)
>>   at org.eclipse.core.internal.jobs.Worker.run(Worker.java:55)
>> Caused by: java.io.IOException: Unknown XML element: stdout
>>   at
>> org.eclipse.ptp.rm.mpi.openmpi.core.rtsystem.OpenMPIProcessMapXml13Parser.parse(OpenMPIProcessMapXml13Parser.java:518)
>>   at
>> org.eclipse.ptp.rm.mpi.openmpi.core.rtsystem.OpenMPIRuntimeSystemJob$1.run(OpenMPIRuntimeSystemJob.java:231)
>>
>>
>> java.io.IOException: Pipe closed
>>   at
>> java.io.PipedInputStream.checkStateForReceive(PipedInputStream.java:190)
>>   at java.io.PipedInputStream.receive(PipedInputStream.java:156)
>>   at java.io.PipedOutputStream.write(PipedOutputStream.java:129)
>>   at
>> org.eclipse.ptp.rm.core.utils.InputStreamListenerToOutputStream.newBytes(InputStreamListenerToOutputStream.java:35)
>>   at
>> org.eclipse.ptp.rm.core.utils.InputStreamObserver.newBytes(InputStreamObserver.java:127)
>>   at
>> org.eclipse.ptp.rm.core.utils.InputStreamObserver.run(InputStreamObserver.java:146)
>>
>>
>> Matthew Fotzler
>>
>> On Wed, Jul 15, 2009 at 10:31 AM, Greg Watson<g.watson@xxxxxxxxxxxx>
>> wrote:
>>>
>>> Hi Matthew,
>>>
>>> Which version of Open MPI 1.3 do you have installed? Older versions cause
>>> a
>>> problem if the program output contains a "<" or "&" character which
>>> confuse
>>> the XML parser. A fix for this is in 1.3.3 and later.
>>>
>>> Regards,
>>> Greg
>>>
>>> On Jul 14, 2009, at 12:39 PM, Matthew Fotzler wrote:
>>>
>>>> Hi,
>>>>
>>>> I'm trying to run Parallel Ocean Program with PTP HEAD.  I'm receiving
>>>> an "Internal Error" part way through execution.  I'm getting some
>>>> console output, but not all of it.  Then the process is terminated
>>>> abruptly and there are 2 errors logged.
>>>>
>>>> org.eclipse.core.runtime.CoreException: Failed to parse output of Open
>>>> MPI command. Check output for errors.
>>>>       at
>>>>
>>>> org.eclipse.ptp.rm.mpi.openmpi.core.OpenMPIPlugin.coreErrorException(OpenMPIPlugin.java:86)
>>>>       at
>>>>
>>>> org.eclipse.ptp.rm.mpi.openmpi.core.rtsystem.OpenMPIRuntimeSystemJob.doWaitExecution(OpenMPIRuntimeSystemJob.java:591)
>>>>       at
>>>>
>>>> org.eclipse.ptp.rm.core.rtsystem.AbstractToolRuntimeSystemJob.run(AbstractToolRuntimeSystemJob.java:258)
>>>>       at org.eclipse.core.internal.jobs.Worker.run(Worker.java:55)
>>>> Caused by: java.io.IOException: The content of elements must consist
>>>> of well-formed character data or markup.
>>>>       at
>>>>
>>>> org.eclipse.ptp.rm.mpi.openmpi.core.rtsystem.OpenMPIProcessMapXml13Parser.parse(OpenMPIProcessMapXml13Parser.java:518)
>>>>       at
>>>>
>>>> org.eclipse.ptp.rm.mpi.openmpi.core.rtsystem.OpenMPIRuntimeSystemJob$1.run(OpenMPIRuntimeSystemJob.java:231)
>>>>
>>>>
>>>> java.io.IOException: Pipe closed
>>>> at
>>>> java.io.PipedInputStream.checkStateForReceive(PipedInputStream.java:190)
>>>> at java.io.PipedInputStream.receive(PipedInputStream.java:156)
>>>> at java.io.PipedOutputStream.write(PipedOutputStream.java:129)
>>>> at
>>>>
>>>> org.eclipse.ptp.rm.core.utils.InputStreamListenerToOutputStream.newBytes(InputStreamListenerToOutputStream.java:35)
>>>> at
>>>>
>>>> org.eclipse.ptp.rm.core.utils.InputStreamObserver.newBytes(InputStreamObserver.java:127)
>>>> at
>>>>
>>>> org.eclipse.ptp.rm.core.utils.InputStreamObserver.run(InputStreamObserver.java:146)
>>>>
>>>> This is my session data:
>>>> eclipse.buildId=I20090611-1540
>>>> java.version=1.5.0_19
>>>> java.vendor=Apple Inc.
>>>> BootLoader constants: OS=macosx, ARCH=x86, WS=cocoa, NL=en_US
>>>> Framework arguments:  -product org.eclipse.sdk.ide
>>>>
>>>> Thanks for your help!
>>>> Matthew Fotzler (UIUC)
>>>> _______________________________________________
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>>>> https://dev.eclipse.org/mailman/listinfo/ptp-dev
>>>
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