Re: [ptp-dev] IOException Pipe closed

[Matthew Fotzler <incongruous@xxxxxxxxx>]

Hi Greg,

Thank you for your help.  I updated to OpenMPI 1.3.3, but I am now
receiving a different error.  Do you have any ideas what might be
causing this?

org.eclipse.core.runtime.CoreException: Failed to parse output of Open
MPI command. Check output for errors.
	at org.eclipse.ptp.rm.mpi.openmpi.core.OpenMPIPlugin.coreErrorException(OpenMPIPlugin.java:86)
	at org.eclipse.ptp.rm.mpi.openmpi.core.rtsystem.OpenMPIRuntimeSystemJob.doWaitExecution(OpenMPIRuntimeSystemJob.java:591)
	at org.eclipse.ptp.rm.core.rtsystem.AbstractToolRuntimeSystemJob.run(AbstractToolRuntimeSystemJob.java:258)
	at org.eclipse.core.internal.jobs.Worker.run(Worker.java:55)
Caused by: java.io.IOException: Unknown XML element: stdout
	at org.eclipse.ptp.rm.mpi.openmpi.core.rtsystem.OpenMPIProcessMapXml13Parser.parse(OpenMPIProcessMapXml13Parser.java:518)
	at org.eclipse.ptp.rm.mpi.openmpi.core.rtsystem.OpenMPIRuntimeSystemJob$1.run(OpenMPIRuntimeSystemJob.java:231)


java.io.IOException: Pipe closed
	at java.io.PipedInputStream.checkStateForReceive(PipedInputStream.java:190)
	at java.io.PipedInputStream.receive(PipedInputStream.java:156)
	at java.io.PipedOutputStream.write(PipedOutputStream.java:129)
	at org.eclipse.ptp.rm.core.utils.InputStreamListenerToOutputStream.newBytes(InputStreamListenerToOutputStream.java:35)
	at org.eclipse.ptp.rm.core.utils.InputStreamObserver.newBytes(InputStreamObserver.java:127)
	at org.eclipse.ptp.rm.core.utils.InputStreamObserver.run(InputStreamObserver.java:146)


Matthew Fotzler

On Wed, Jul 15, 2009 at 10:31 AM, Greg Watson<g.watson@xxxxxxxxxxxx> wrote:
> Hi Matthew,
>
> Which version of Open MPI 1.3 do you have installed? Older versions cause a
> problem if the program output contains a "<" or "&" character which confuse
> the XML parser. A fix for this is in 1.3.3 and later.
>
> Regards,
> Greg
>
> On Jul 14, 2009, at 12:39 PM, Matthew Fotzler wrote:
>
>> Hi,
>>
>> I'm trying to run Parallel Ocean Program with PTP HEAD.  I'm receiving
>> an "Internal Error" part way through execution.  I'm getting some
>> console output, but not all of it.  Then the process is terminated
>> abruptly and there are 2 errors logged.
>>
>> org.eclipse.core.runtime.CoreException: Failed to parse output of Open
>> MPI command. Check output for errors.
>>        at
>> org.eclipse.ptp.rm.mpi.openmpi.core.OpenMPIPlugin.coreErrorException(OpenMPIPlugin.java:86)
>>        at
>> org.eclipse.ptp.rm.mpi.openmpi.core.rtsystem.OpenMPIRuntimeSystemJob.doWaitExecution(OpenMPIRuntimeSystemJob.java:591)
>>        at
>> org.eclipse.ptp.rm.core.rtsystem.AbstractToolRuntimeSystemJob.run(AbstractToolRuntimeSystemJob.java:258)
>>        at org.eclipse.core.internal.jobs.Worker.run(Worker.java:55)
>> Caused by: java.io.IOException: The content of elements must consist
>> of well-formed character data or markup.
>>        at
>> org.eclipse.ptp.rm.mpi.openmpi.core.rtsystem.OpenMPIProcessMapXml13Parser.parse(OpenMPIProcessMapXml13Parser.java:518)
>>        at
>> org.eclipse.ptp.rm.mpi.openmpi.core.rtsystem.OpenMPIRuntimeSystemJob$1.run(OpenMPIRuntimeSystemJob.java:231)
>>
>>
>> java.io.IOException: Pipe closed
>> at
>> java.io.PipedInputStream.checkStateForReceive(PipedInputStream.java:190)
>> at java.io.PipedInputStream.receive(PipedInputStream.java:156)
>> at java.io.PipedOutputStream.write(PipedOutputStream.java:129)
>> at
>> org.eclipse.ptp.rm.core.utils.InputStreamListenerToOutputStream.newBytes(InputStreamListenerToOutputStream.java:35)
>> at
>> org.eclipse.ptp.rm.core.utils.InputStreamObserver.newBytes(InputStreamObserver.java:127)
>> at
>> org.eclipse.ptp.rm.core.utils.InputStreamObserver.run(InputStreamObserver.java:146)
>>
>> This is my session data:
>> eclipse.buildId=I20090611-1540
>> java.version=1.5.0_19
>> java.vendor=Apple Inc.
>> BootLoader constants: OS=macosx, ARCH=x86, WS=cocoa, NL=en_US
>> Framework arguments:  -product org.eclipse.sdk.ide
>>
>> Thanks for your help!
>> Matthew Fotzler (UIUC)
>> _______________________________________________
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>> ptp-dev@xxxxxxxxxxx
>> https://dev.eclipse.org/mailman/listinfo/ptp-dev
>
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