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[cdt-dev] Index not updated after folder deletion

Hello altogether,
I have come across a bug that the index is not updated properly when a folder is deleted via the project explorer (or any other folder deletion triggering action). Deleting the files directly is not a problem.
I have already filed an issue and I am working on a patch. But I could need some help with some classes in order to provide a proper patch.
The issue is: https://bugs.eclipse.org/bugs/show_bug.cgi?id=343538
Thanks in advance: Marko