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Project > Clean should default to "Clean selected project" instead of "Clean all projects", as it is much more often used (100% in my case).
This is a duplicate of bug 65944.
Auto-build almost invariably keeps my projects in a correctly built state. When it does not, it's because something has gone wrong internally, which means the only time I use Project > Clean is when I want to re-build everything to try to recover from this problem. For me, swapping the default would be a pain. We'll consider this, but it's low priority.
(In reply to comment #0) > Project > Clean should default to "Clean selected project" instead of "Clean > all projects", as it is much more often used (100% in my case). The CleanDialog class seems to be persisting its settings in 3.4M1. So if you set it to be "Clean selected project" once, it will forever be like that until the next time you happen to select "Clean all projects" (and then you'd just have to swap it back again the next time you open up the dialog). Does this satisfy your needs?
Yes, but even in Eclipse 3.3, the behaviour is good enough for me: whenever I select Project > Clean, the default is "Clean projects selected below" and defaults to the current/active project. That's exactly what I was looking for! :-)
Marking 3.3.1 for verification
Verified in M20070913-1500