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I often find myself running ant from eclipse frequently, especially for things which eclipse doesn't handle, like enhancing JDO classes. It is awkward to have the extra step of clicking OK on the dialog. Could we have a 'Run Target >' item on the build.xml context menu, which would have a submenu of target names? This would still need to use the ant arguments specified in the dialog box.
Moving to Platform-Ant
*** Bug 11012 has been marked as a duplicate of this bug. ***
It sounds better than the idea of having the targets per project. Not sure if it is good or not to use the command lines from the Wizard. Moving to Platform UI (External Tools) for comment. Not essential for 2.0.
Can now configure an Ant script as an External Tool with a particular target, so you don't need to specify the target each time.