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From the eclipse error log: java.lang.NullPointerException at org.eclipse.ui.texteditor.AbstractTextEditor$TextEditorSavable.isDirty(AbstractTextEditor.java:7161) at org.eclipse.ui.internal.Workbench.getFilteredSaveables(Workbench.java:3447) at org.eclipse.ui.internal.Workbench.saveAll(Workbench.java:3420) at org.eclipse.egit.ui.UIUtils.saveAllEditors(UIUtils.java:894) at org.eclipse.egit.ui.internal.staging.StagingView.internalCommit(StagingView.java:4494) at org.eclipse.egit.ui.internal.staging.StagingView.commit(StagingView.java:4453) at org.eclipse.egit.ui.internal.staging.StagingView$21.widgetSelected(StagingView.java:1154) at org.eclipse.swt.widgets.TypedListener.handleEvent(TypedListener.java:252) at org.eclipse.swt.widgets.EventTable.sendEvent(EventTable.java:89) at org.eclipse.swt.widgets.Display.sendEvent(Display.java:5895) at org.eclipse.swt.widgets.Widget.sendEvent(Widget.java:1515) at org.eclipse.swt.widgets.Display.runDeferredEvents(Display.java:5126) at org.eclipse.swt.widgets.Display.readAndDispatch(Display.java:4581) at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine$5.run(PartRenderingEngine.java:1154) at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:338) at org.eclipse.e4.ui.internal.workbench.swt.PartRenderingEngine.run(PartRenderingEngine.java:1045) at org.eclipse.e4.ui.internal.workbench.E4Workbench.createAndRunUI(E4Workbench.java:155) at org.eclipse.ui.internal.Workbench.lambda$3(Workbench.java:644) at org.eclipse.core.databinding.observable.Realm.runWithDefault(Realm.java:338) at org.eclipse.ui.internal.Workbench.createAndRunWorkbench(Workbench.java:551) at org.eclipse.ui.PlatformUI.createAndRunWorkbench(PlatformUI.java:156) at org.eclipse.ui.internal.ide.application.IDEApplication.start(IDEApplication.java:152) at org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:203) at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:136) at org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:104) at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:401) at org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:255) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:659) at org.eclipse.equinox.launcher.Main.basicRun(Main.java:596) at org.eclipse.equinox.launcher.Main.run(Main.java:1467) at org.eclipse.equinox.launcher.Main.main(Main.java:1440)
There is a reference in the code: // This should not happen. Code added to handle the below bug. // https://bugs.eclipse.org/bugs/show_bug.cgi?id=550336 So actually it *IS* happening ...