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"Refresh using native hooks or polling" is reset every time eclipse is restarted. Steps to reproduce: Window -> Preferences -> Workspace In Workspace settings uncheck "Refresh using native hooks or polling" checkbox and press "Apply and Close". Close eclipse and start again, wait ~30sec. "Refresh using native hooks or polling" is checked (enabled). Is there any workaround to disable this permanently so I don't have to disable it every time eclipse starts?