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When selecting 'Classic' theme and 'Classic theme' as Color & Font theme, javadoc background color is set to black and cannot be changed. This leads to completely unreadable javadoc tooltips (black background, black text) and you changes made within color preferences are reverted immediately. See also here: https://stackoverflow.com/questions/50628165/eclipse-javadoc-background-overrides-default/54815256 A regression must have been introduced since 4.5.2 when selecting 'Classic theme' as Color & Font theme as it works in that version. Workaround: If you select any other Color & Font theme, e.g. 'Default (current)' (and even still keeping 'Classic' as theme), the bug does not appear.