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Problem: Dark theme settings in general modify settings on preferences.default scope. If something will be modified on instance scope dark theme defaults will be ignored. Simple case: 1. Install new luna/mars workbench. 2. go to php / editor / syntax coloring and enable "deprecated memebers" 3. Save 4. Go to General -> appearance and switch to dark theme 5. Save & restart 6. Open any php file with deprecated memebers Result: PHP syntax coloring looks horrible