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When clicking compare with base, the compare editor should indicate which files have comments (and how many) in the outline.
I agree that this would a helpful enhancement.
Mylyn has been restructured, and our issue tracking has moved to GitHub [1]. We are closing ~14K Bugzilla issues to give the new team a fresh start. If you feel that this issue is still relevant, please create a new one on GitHub. [1] https://github.com/orgs/eclipse-mylyn