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Unmatched folder should be sorted alphabetically by repository label. Currently the order appears random.
Created attachment 212512 [details] screenshot showing current order
Sounds reasonable. I have marked this as helpwanted.
Pushed the fix to gerrit https://git.eclipse.org/r/#/c/7031/
Mylyn has been restructured, and our issue tracking has moved to GitHub [1]. We are closing ~14K Bugzilla issues to give the new team a fresh start. If you feel that this issue is still relevant, please create a new one on GitHub. [1] https://github.com/orgs/eclipse-mylyn