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Steps to reproduce: 1. Create a new Web Application Bundle. 2. Remove the OSGi Facet, choosing the 2nd or 3rd radio button in the facet uninstall page. Result: Plugin nature is removed but the PDE builders remain, which may lead to validation errors and warnings.
Created attachment 194728 [details] patch The root cause is bug 344720 in the Platform. This patch works around the bug by explicitly removing the builders from the project description.
Patch committed to master.