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If all the URLs for a help file specified in a toc.xml file use #'s to specify a tag, then that file is not included when the help search index is rebuilt. For example if you have topics like this: <topic label="Acknowledgements" href="doc/xsip/00preface.htm#acknowledgements"> There must be a topic like this: <topic label="Preface" href="doc/xsip/00preface.htm"> Otherwise 00preface.htm will not be indexed for help search, and the filename is not listed in the indexed_docs file.
Fixed. For document fragment like href="doc/xsip/00preface.htm#acknowledgements" a whole document with href="doc/xsip/00preface.htm" will be indexed, even it does not exists in the TOC navigation.