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Version org.eclipse.update.core_3.2.200.v20080421.jar or later is needed to address issues fixed in bug 226850 Numerous errors while packing "SHA1 digest error for META-INF/eclipse.inf" This jar available in build http://download.eclipse.org/eclipse/downloads/drops/I20080427-2000/index.php or later.
I20080427-2000 has big red Xs all over the download page I20080429-0100 red Xs I20080428-2000 red "pending"s I20080428-1800 "build failed" I20080428-1300 "build failed" I20080428-0800 red "pending" I20080427-2000 red Xs So I'm taking all this as evidence that there is not yet a good compile of this jar and thus I cannot update Ganymatic yet.
Bjorn, I suggest taking the jar from I20080429-0100. There are red X's on the download page due to automated test failures, but there are no failures related to update. Update has only had a very small number of changes since M6 and is stable. As a bonus, we released a small fix in update yesterday that helps with diagnosis of security exceptions caused by bad manifest signatures (bug 229019).
After spending all day on this problem, I've finally jinked the files around enough that we have a green build again. The build I20080429-0100 jar is included.