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When I change preferences, click Apply, close out of the preferences, shut down Eclipse, and then restart Eclipse, some of the preferences that I changed are not saved. This occurs even when I export the preferences and then reimport them. One of the preferences that is not saved which is included with Eclipse are the debug settings underneath the Java tab. Another setting that is not saving is a setting for a plugin that I installed from genuitec.com. It was saving in an earlier version of Eclipse, but when I updated to F2, these settings no longer saved and I have to reinitialize them every time I load up Eclipse.
*** This bug has been marked as a duplicate of 18644 ***