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Currently you can only choose between: local version on disk lastest cvs (and prestine svn copy if you have e.g. subeclipse installed) This is not very usefull if you have a mix of svn/cvs projects. There should be a project specific option or even better an option for something like "automatic" that detects which one is the relevant one.
*** This bug has been marked as a duplicate of 46090 ***