| [stem-dev] STEM Call Notes March 2, 2011 |
03/02/2011 Task and Documentation Tracking On call: Jamie, Jan, Dan, Stefan, Matt, Werner, Judy Please Note: All participants are invited to input into the agenda by sending an email to judyvdouglas@xxxxxxxxxxx on the Monday before the call by noon California time. Update on Graphical Editor and the Pajak Editor Part II -- Jan · Jan: Has Stefan tried the editor? Stefan: Yes. Excellent. · Jan: Queries re (1) saving and (2) canonical graph · Discussion re saving · Create hidden gml folder for your project; when you create a custom graph, save it to that folder · Where to put folder? Under projects or graphs? What does this mean if graph is dragged to a new event? Currently referenced, eventually may need to clone · Decision re saving · To Do: Add a bug: With creation of a new gml folder have to deal with refactoring · For older projects, users will need to create it themselves · Jan: Had no problem with plug-in; no need for additional documentation · Jan: Need inline? Stefan: Yes in case edit later, add changes to emf folder · To Do: After editor is checked in, will need to move classes up higher · Discussion re canonical graph · Save graph, all changes made as single graph; edit only single graph; Stefan: now have to edit submodel, not parent model; Jamie: can flatten, can combine · Jamie: Save = save graph, fragments; new feature export to canonical graph; flatten · Jan: Can keep track of changes · Decision re canonical graph · To Do: Now give option to view canonical graph · In future give option to save whole canonical graph URI naming that must be used by Pajak – Jamie · Jamie: If using Pajak to make new graph, need to conform to STEM naming convention: name must contain parent URI followed by a dash as a separator · To Do: Jan will verify that nodes under existing node comply and the URI reflects containment Partitioning a STEM graph across servers -- Stefan · Stefan: Has developed early version with optimal partitioning to reduce load · Jamie: Any experts on Java messaging? Now using socket messaging. What’s fastest? Different ways to support? Need to check with Australia group Logging of parent nodes -- Jamie · Jamie: Confusion when logger logs parent nodes, need to aggregate? Aggregation by Analysis Perspective – don’t need · To Do: Eliminate logging of parent nodes TB Model -- Stefan · Stefan: Model w/ two infectious compartments (latest and active) is working; need to make sure can handle everywhere in code in STEM Added Items · Jamie: Arik can’t join call; has call w/ him tomorrow to discuss TB models, etc. · To Do: Jamie to follow up with colleagues in Australia Bug 194114: Javadoc generation, etc. – Matt · Discussion: When see Javadoc, usually APIs from binary build; Most STEM users are building from source, not sure how helpful Javadoc would be but would require an incremental amount of work · Decision · To Do: Close the bug Update on student projects · Students not on call; item deferred Items from Participants · Jan: When using the Pajak importer and the picker, found a bug. URI has a mistake: prefix appears twice in the code
· Judy: PLoS submitted; heard from Elsevier 2/22, will contact mid-March if no word by then; will check on status of AMIA proposal · Werner: Healthcare OSGI to have BOF meeting Monday 21st; Jamie: probably not able to attend Eclipsecon
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