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Re: [ptp-user] ptp-user Digest, Vol 69, Issue 12 -Re:Eclipse Module System
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Hello Greg,
With the regards to the last answer I got for the Eclipse Module System question, I will take the offer and request for more information about creating a custom configuration for Eclipse. I have tried Google and searched for making a custom configuration, but I can't seem to find any guide on making one. Can you possibly point me to a guide for creating the custom configuration that I need or explain how to make one?
Thanks,
Tien Ngo
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Sent: Tuesday, August 21, 2012 12:00 PM
To: ptp-user@xxxxxxxxxxx
Subject: ptp-user Digest, Vol 69, Issue 12
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Today's Topics:
1. Re: ptp exception (Greg Watson)
2. Re: Using PTP with Sun Grid Engine(SGE) Scheduler (Greg Watson)
3. Re: Eclipse Module System (Greg Watson)
----------------------------------------------------------------------
Message: 1
Date: Mon, 20 Aug 2012 13:27:06 -0400
From: Greg Watson <g.watson@xxxxxxxxxxxx>
To: PTP User list <ptp-user@xxxxxxxxxxx>
Subject: Re: [ptp-user] ptp exception
Message-ID: <D7CE4B82-F7AF-4689-B527-03C2F4AD7FDD@xxxxxxxxxxxx>
Content-Type: text/plain; charset="iso-8859-1"
Hi Jamil,
What path are you specifying for the 'Path to SDM executable' on the Debugger tab in the launch configuration?
Regards,
Greg
On Aug 16, 2012, at 8:01 AM, Jamil Appa wrote:
>
> Hi
>
> I am trying to debug a parallel application and the debugger is hanging after this message is issued to the console.
>
> System details: Scientific Linux 6.2/gdb 7.4/Juno/ptp 6.0.1.2012.06.292032/ptp-proxy-6.0.1
>
> Is there anything I can try to diagnose the problem?
>
> Thanks
>
> Jamil
>
>
> ================= TIME RESUME: 1345117714724
> **** Msg: AbstractEventManager - notifyEventRequest(): Request: List stack frames request in status [DONE] for {}.
> Msg: NotifyJob - size of runnables: 10
> ================= TIME ALL SUSPENDED: 53
> Msg: EventRequestManager - addEventRequest(): Request: Resume request in status [UNKNOWN] for {0}.
> **** Msg: AbstractEventManager - registerEventRequest(): Request: Resume request in status [RUNNING] for {0}.
> Msg: NotifyJob - size of runnables: 8
> **** Msg: AbstractEventManager - notifyEventRequest(): Request: Resume request in status [DONE] for {}.
> ================= TIME RESUME: 1345117726685
> Msg: NotifyJob - size of runnables: 6
> Msg: NotifyJob - size of runnables: 6
> Exception in thread "Proxy Client Packet Thread" java.lang.ArrayIndexOutOfBoundsException: 681
> at org.eclipse.ptp.proxy.util.compression.huffmancoder.HuffmanCoder.decode(HuffmanCoder.java:416)
> at org.eclipse.ptp.proxy.util.compression.huffmancoder.HuffmanByteUncompress.apply(HuffmanByteUncompress.java:75)
> at org.eclipse.ptp.proxy.packet.ProxyPacket.read(ProxyPacket.java:260)
> at org.eclipse.ptp.proxy.client.AbstractProxyClient.processPacket(AbstractProxyClient.java:260)
> at org.eclipse.ptp.proxy.client.AbstractProxyClient.access$4(AbstractProxyClient.java:255)
> at org.eclipse.ptp.proxy.client.AbstractProxyClient$2.run(AbstractProxyClient.java:352)
>
>
> --
> Jamil Appa | Co-Founder and Director | Zenotech
> +447747606788 |
> jamil.appa@xxxxxxxxxxxx
> Zenotech Ltd | University Gate East | Park Row | Bristol | BS1 5UB
> Registered Address: 1 Larkfield Grove | Chepstow | Monmouthshire | NP16 5UF | UK
> Registered in England & Wales No: 7926926 VAT No: 128198591
>
> _______________________________________________
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Message: 2
Date: Mon, 20 Aug 2012 13:31:25 -0400
From: Greg Watson <g.watson@xxxxxxxxxxxx>
To: PTP User list <ptp-user@xxxxxxxxxxx>
Subject: Re: [ptp-user] Using PTP with Sun Grid Engine(SGE) Scheduler
Message-ID: <DF335F04-C85C-43A3-997D-A1542C27F4F9@xxxxxxxxxxxx>
Content-Type: text/plain; charset=us-ascii
Hi Antelmo,
You need to use the 'Grid Engine-Generic-Batch' target system type when creating a run configuration. This should work with most GE implementations. If you want to manually configure monitoring for GE, switch to the System Monitoring Perspective, and create a new monitor. For 'Monitor Type', choose 'Grid Engine'.
If this doesn't work for you system, you may need to import a configuration into your workspace, then customize the commands so they are correct. I can give you more information on this if necessary.
Regards,
Greg
On Aug 15, 2012, at 3:00 PM, Antelmo Aguilar wrote:
> Hello everyone,
>
> I have downloaded and updated PTP and I would like to set it up so that it can be used in our cluster. I have looked in the documentation, but I have not seen any clear instructions on how to setup PTP with SGE, I have see some reference to how to set it up with PBS, but nothing about SGE. I would greatly appreciate some guidance in this issue.
>
> Thank you,
> Antelmo Aguilar
> _______________________________________________
> ptp-user mailing list
> ptp-user@xxxxxxxxxxx
> https://dev.eclipse.org/mailman/listinfo/ptp-user
------------------------------
Message: 3
Date: Mon, 20 Aug 2012 14:13:34 -0400
From: Greg Watson <g.watson@xxxxxxxxxxxx>
To: PTP User list <ptp-user@xxxxxxxxxxx>
Subject: Re: [ptp-user] Eclipse Module System
Message-ID: <D9FB1192-2D6D-4F14-B9D8-7F06392D6294@xxxxxxxxxxxx>
Content-Type: text/plain; charset="windows-1252"
Tien,
The only way to do this currently is to create a custom configuration in your workspace, then add something like:
<submit-interactive ?>
<arg isUndefinedIfMatches=";">${ptp_rm:modules#value};</arg>
<arg>qsub</arg>
<arg>?other arguments?</arg>
?
</submit-interactive>
The ${ptp_rm:modules#value} variable will be replaced with the modules commands that have been specified through the Environment Management tab on the project properties.
Let me know if you'd like any further information.
Regards,
Greg
On Aug 14, 2012, at 11:18 AM, Tien D Ngo wrote:
> Hello Everybody,
>
> I am currently using a synchronize C/C++ project to try and utilize the Module System that is in the C/C++ build > Environment Management tab. I was successful in making and building a MPI project with the module system on the server side, but I can't currently run it as a PBS generic batch without creating all of the environment variables by hand (in the run configurations> Parallel Application> Environment). Is there a way I can use the same module system from System Management for the run configurations so I don't have to type up all of the environment variables that is on the server side?
>
> Thank You,
>
> Tien Ngo
> Tngo@xxxxxxx
> _______________________________________________
> ptp-user mailing list
> ptp-user@xxxxxxxxxxx
> https://dev.eclipse.org/mailman/listinfo/ptp-user
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