Re: [ptp-user] Resource Manager hanging and PTP Server compiling problem

[Beth Tibbitts <tibbitts@xxxxxxxxxx>]

Denis,
Could you please file a bug? That should be documented and fixed.
Go to main PTP wiki page http://wiki.eclipse.org/PTP and "Open a new bug for PTP"
We're planning on a new 5.0.5 around Feb 7 and that should go in the Eclipse Parallel IDE package end of Feb so we should figure out what's wrong!

Summary: Building the proxy (PTP Server compiling problems) on Ubuntu  is listing an error regarding SLURM (not installed) on PTP 5.0.4 but not  with PTP 5.0.2
(By the way what is your version of OpenMPI?)

The PTP Release notes link that's referenced in this thread [2]  is very old and it should be [1]
instead.  If there's something there that works for you that's not in the newer one let us know!

[1] CORRECT: http://wiki.eclipse.org/PTP/release_notes/5.0
[2] OLD: http://www.eclipse.org/ptp/docs/releases/release-1.1.php


...Beth

Beth Tibbitts
Eclipse Parallel Tools Platform  http://eclipse.org/ptp
IBM STG - High Performance Computing Tools
Mailing Address:  IBM Corp., 745 West New Circle Road, Lexington, KY 40511

Denis Davydov ---01/16/2012 09:34:20 AM---Dear Mr. Houssen, Just wanted to let you know that

From:	Denis Davydov <denis.davydov@xxxxxxxxxxxxxxxxxxx>
To:	Franck Houssen <fh_p@xxxxxxxxxxx>, Ptp User <ptp-user@xxxxxxxxxxx>,
Date:	01/16/2012 09:34 AM
Subject:	Re: [ptp-user] Resource Manager hanging and PTP Server compiling problems
Sent by:	ptp-user-bounces@xxxxxxxxxxx

---

Dear Mr. Houssen,

Just wanted to let you know that
the Eclipse proxy version you use compiles fine with no errors.
So it was something with the new one which could not detect that I 
don't have
SLURM installed.

With regards to debugger hanging,
I did a clean reinstall and "vanilla" Eclipse Parallel IDE with no 
updates
and it works fine now!

So thank you for your help with those issues. Everything is ok now.

Kind regards,
Denis.

On 16.01.2012 12:14, Franck Houssen wrote:
> I seems I did exactly what you have done but I didn't get errors you
> mention ?!... I am not sure to be able to help, sorry...
>
> Anyway, to answer your question, I use :
> 1. org.eclipse.ptp.linux.x86_64_5.0.2.201109141657
> 2. eclipse version : Eclipse IDE for Parallel Application Developers,
> Version: Indigo Service Release 1, Build id: 20110916-0149
>
> FH
>
>> Date: Mon, 16 Jan 2012 11:37:30 +0100
>> From: denis.davydov@xxxxxxxxxxxxxxxxxxx
>> To: fh_p@xxxxxxxxxxx; ptp-user@xxxxxxxxxxx
>> Subject: RE: [ptp-user] Resource Manager hanging and PTP Server
> compiling problems
>>
>> Dear Mr. Houssen,
>>
>> Thank you for your advice.
>> I compiled Open MPI from scratch with --with-devel-headrs and
>> updated the LD_LIBRARY PATH using "sudo ldconfig -v".
>>
>> ompi_info shows "Open MPI: 1.4.4" as expected.
>> I'm able to compile test project and I see in output (as expected):
>>
>> Hello MPI World From process 0: Num processes: 4
>> Hello MPI World from process 1!
>> Hello MPI World from process 2!
>> Hello MPI World from process 3!
>>
>> Yet, sh BUILD fails with the same error (but still provides sdm
>> executable) about SLURM.
>>
>> ...
>> checking build system type... x86_64-unknown-linux-gnu
>> configure: line 2275: 0: command not found
>> configure: error: The top installation directory of SLURM rms must
> be
>> specified via "--with-slurm=DIR".
>>
>> And PTP Debugger still hangs on at MPI_Init with "Open MPI Job". So
> far
>> no luck...
>>
>>
>> Can I ask you please which version of PTP proxy you use? I would try
> to
>> compile it.
>> Mine is: .linux.x86_64_5.0.4.201111121445
>>
>>
>> Kind regards,
>> Denis.
>>
>>
>> On 16.01.2012 10:25, Franck Houssen wrote:
>> > Hello,
>> >
>> > I have to say I don't know why it works at my sidebut not a yours.
>> > The only difference seems to be that, personnaly, I didn't used
>> > synaptic to install OpenMPI : I compiled and installed it from
>> > source.
>> > These 2 ways should be equivalent.
>> > If I got it well (not sure), mpi.h is present in /.../include even
> if
>> > you didn't have the devel option (= configure --with-devel-headers
> =
>> > libopenmpi-dev in synaptic I guess) : the first time, I installed
> MPI
>> > was without --with-devel-headers and I succeeded to compile and
> run a
>> > MPI program.
>> > Ending up with a sdm is not a quarantee ! You may end up with only
>> > pieces of a whole.
>> >
>> > I only could advice you to try to compile from source (if you do
> so
>> > and that your installation path is NOT /usr/bin, don't forget to
>> > update the LD_LIBRAARY PATH using ldconfig : do NOT use .bashrc or
>
>> > you
>> > will get incomplete run-time behavior that only works in xterm)
>> >
>> > ... Sorry, no other idea
>> >
>> > Regards,
>> >
>> > FH
>> >
>> > PS : Here is some ll that may help you to compare what is not
> working
>> > with your install
>> >
>> > ~ > ll /usr/local/bin
>> > total 2068
>> > drwxr-xr-x 2 root root 4096 2012-01-13 19:43 .
>> > drwxr-xr-x 10 root root 4096 2011-10-12 16:26 ..
>> > lrwxrwxrwx 1 root root 12 2012-01-13 19:43 mpic++ -> opal_wrapper
>> > lrwxrwxrwx 1 root root 12 2012-01-13 19:43 mpicc -> opal_wrapper
>> > lrwxrwxrwx 1 root root 12 2012-01-13 19:43 mpiCC -> opal_wrapper
>> > lrwxrwxrwx 1 root root 12 2012-01-13 19:43 mpicc-vt ->
> opal_wrapper
>> > lrwxrwxrwx 1 root root 12 2012-01-13 19:43 mpiCC-vt ->
> opal_wrapper
>> > lrwxrwxrwx 1 root root 12 2012-01-13 19:43 mpic++-vt ->
> opal_wrapper
>> > lrwxrwxrwx 1 root root 12 2012-01-13 19:43 mpicxx -> opal_wrapper
>> > lrwxrwxrwx 1 root root 12 2012-01-13 19:43 mpicxx-vt ->
> opal_wrapper
>> > lrwxrwxrwx 1 root root 7 2012-01-13 19:43 mpiexec -> orterun
>> > lrwxrwxrwx 1 root root 12 2012-01-13 19:43 mpif77 -> opal_wrapper
>> > lrwxrwxrwx 1 root root 12 2012-01-13 19:43 mpif77-vt ->
> opal_wrapper
>> > lrwxrwxrwx 1 root root 12 2012-01-13 19:43 mpif90 -> opal_wrapper
>> > lrwxrwxrwx 1 root root 12 2012-01-13 19:43 mpif90-vt ->
> opal_wrapper
>> > lrwxrwxrwx 1 root root 7 2012-01-13 19:43 mpirun -> orterun
>> > lrwxrwxrwx 1 root root 10 2012-01-13 19:43 ompi-clean ->
> orte-clean
>> > -rwxr-xr-x 1 root root 150934 2012-01-13 19:43 ompi_info
>> > lrwxrwxrwx 1 root root 8 2012-01-13 19:43 ompi-iof -> orte-iof
>> > lrwxrwxrwx 1 root root 7 2012-01-13 19:43 ompi-ps -> orte-ps
>> > -rwxr-xr-x 1 root root 15019 2012-01-13 19:43 ompi-server
>> > lrwxrwxrwx 1 root root 12 2012-01-13 19:42 opalc++ -> opal_wrapper
>> > lrwxrwxrwx 1 root root 12 2012-01-13 19:42 opalcc -> opal_wrapper
>> > -rwxr-xr-x 1 root root 23201 2012-01-13 19:42 opal_wrapper
>> > -rwxr-xr-x 1 root root 161081 2012-01-13 19:43 opari
>> > lrwxrwxrwx 1 root root 12 2012-01-13 19:42 ortec++ -> opal_wrapper
>> > lrwxrwxrwx 1 root root 12 2012-01-13 19:42 ortecc -> opal_wrapper
>> > -rwxr-xr-x 1 root root 14373 2012-01-13 19:42 orte-clean
>> > -rwxr-xr-x 1 root root 8588 2012-01-13 19:42 orted
>> > -rwxr-xr-x 1 root root 14591 2012-01-13 19:42 orte-iof
>> > -rwxr-xr-x 1 root root 19198 2012-01-13 19:42 orte-ps
>> > -rwxr-xr-x 1 root root 106561 2012-01-13 19:42 orterun
>> > -rwxr-xr-x 1 root root 190909 2012-01-13 19:43 otfaux
>> > -rwxr-xr-x 1 root root 12740 2012-01-13 19:43 otfconfig
>> > -rwxr-xr-x 1 root root 146373 2012-01-13 19:43 otfdump
>> > -rwxr-xr-x 1 root root 149808 2012-01-13 19:43 otfinfo
>> > -rwxr-xr-x 1 root root 146061 2012-01-13 19:43 otfmerge
>> > -rwxr-xr-x 1 root root 1633 2012-01-06 11:42 pcap-config
>> > -rwxr-xr-x 1 root root 82254 2012-01-13 19:43 vtcc
>> > -rwxr-xr-x 1 root root 82254 2012-01-13 19:43 vtcxx
>> > -rwxr-xr-x 1 root root 82254 2012-01-13 19:43 vtf77
>> > -rwxr-xr-x 1 root root 82254 2012-01-13 19:43 vtf90
>> > -rwxr-xr-x 1 root root 258717 2012-01-13 19:43 vtfilter
>> > -rwxr-xr-x 1 root root 311093 2012-01-13 19:43 vtunify
>> >
>> > ~ > ll /usr/local/lib
>> > total 6764
>> > drwxr-xr-x 4 root root 4096 2012-01-13 19:43 .
>> > drwxr-xr-x 10 root root 4096 2011-10-12 16:26 ..
>> > -rwxr-xr-x 1 root root 991 2012-01-13 19:43 libmca_common_sm.la
>> > lrwxrwxrwx 1 root root 25 2012-01-13 19:43 libmca_common_sm.so ->
>> > libmca_common_sm.so.1.0.1
>> > lrwxrwxrwx 1 root root 25 2012-01-13 19:43 libmca_common_sm.so.1
> ->
>> > libmca_common_sm.so.1.0.1
>> > -rwxr-xr-x 1 root root 13929 2012-01-13 19:43
>> > libmca_common_sm.so.1.0.1
>> > -rwxr-xr-x 1 root root 1041 2012-01-13 19:43 libmpi_cxx.la
>> > lrwxrwxrwx 1 root root 19 2012-01-13 19:43 libmpi_cxx.so ->
>> > libmpi_cxx.so.0.0.1
>> > lrwxrwxrwx 1 root root 19 2012-01-13 19:43 libmpi_cxx.so.0 ->
>> > libmpi_cxx.so.0.0.1
>> > -rwxr-xr-x 1 root root 139506 2012-01-13 19:43 libmpi_cxx.so.0.0.1
>> > -rwxr-xr-x 1 root root 1045 2012-01-13 19:43 libmpi_f77.la
>> > lrwxrwxrwx 1 root root 19 2012-01-13 19:43 libmpi_f77.so ->
>> > libmpi_f77.so.0.0.2
>> > lrwxrwxrwx 1 root root 19 2012-01-13 19:43 libmpi_f77.so.0 ->
>> > libmpi_f77.so.0.0.2
>> > -rwxr-xr-x 1 root root 348591 2012-01-13 19:43 libmpi_f77.so.0.0.2
>> > -rwxr-xr-x 1 root root 1045 2012-01-13 19:43 libmpi_f90.la
>> > lrwxrwxrwx 1 root root 19 2012-01-13 19:43 libmpi_f90.so ->
>> > libmpi_f90.so.0.1.0
>> > lrwxrwxrwx 1 root root 19 2012-01-13 19:43 libmpi_f90.so.0 ->
>> > libmpi_f90.so.0.1.0
>> > -rwxr-xr-x 1 root root 19410 2012-01-13 19:43 libmpi_f90.so.0.1.0
>> > -rwxr-xr-x 1 root root 996 2012-01-13 19:43 libmpi.la
>> > lrwxrwxrwx 1 root root 15 2012-01-13 19:43 libmpi.so ->
>> > libmpi.so.0.0.3
>> > lrwxrwxrwx 1 root root 15 2012-01-13 19:43 libmpi.so.0 ->
>> > libmpi.so.0.0.3
>> > -rwxr-xr-x 1 root root 843133 2012-01-13 19:43 libmpi.so.0.0.3
>> > -rwxr-xr-x 1 root root 997 2012-01-13 19:42 libopenmpi_malloc.la
>> > lrwxrwxrwx 1 root root 26 2012-01-13 19:42 libopenmpi_malloc.so ->
>> > libopenmpi_malloc.so.0.0.0
>> > lrwxrwxrwx 1 root root 26 2012-01-13 19:42 libopenmpi_malloc.so.0
> ->
>> > libopenmpi_malloc.so.0.0.0
>> > -rwxr-xr-x 1 root root 7755 2012-01-13 19:42
>> > libopenmpi_malloc.so.0.0.0
>> > -rwxr-xr-x 1 root root 966 2012-01-13 19:42 libopen-pal.la
>> > lrwxrwxrwx 1 root root 20 2012-01-13 19:42 libopen-pal.so ->
>> > libopen-pal.so.0.0.0
>> > lrwxrwxrwx 1 root root 20 2012-01-13 19:42 libopen-pal.so.0 ->
>> > libopen-pal.so.0.0.0
>> > -rwxr-xr-x 1 root root 407854 2012-01-13 19:42
> libopen-pal.so.0.0.0
>> > -rwxr-xr-x 1 root root 996 2012-01-13 19:42 libopen-rte.la
>> > lrwxrwxrwx 1 root root 20 2012-01-13 19:42 libopen-rte.so ->
>> > libopen-rte.so.0.0.0
>> > lrwxrwxrwx 1 root root 20 2012-01-13 19:42 libopen-rte.so.0 ->
>> > libopen-rte.so.0.0.0
>> > -rwxr-xr-x 1 root root 366630 2012-01-13 19:42
> libopen-rte.so.0.0.0
>> > -rw-r--r-- 1 root root 241766 2012-01-13 19:43 libotf.a
>> > -rwxr-xr-x 1 root root 891 2012-01-13 19:43 libotf.la
>> > -rw-r--r-- 1 root root 1225132 2012-01-06 11:42 libpcap.a
>> > lrwxrwxrwx 1 root root 12 2012-01-06 11:42 libpcap.so ->
> libpcap.so.1
>> > lrwxrwxrwx 1 root root 16 2012-01-06 11:42 libpcap.so.1 ->
>> > libpcap.so.1.2.1
>> > -rwxr-xr-x 1 root root 743128 2012-01-06 11:42 libpcap.so.1.2.1
>> > -rw-r--r-- 1 root root 360138 2012-01-13 19:43 libvt.a
>> > -rw-r--r-- 1 root root 167238 2012-01-13 19:43 libvt.fmpi.a
>> > -rw-r--r-- 1 root root 544284 2012-01-13 19:43 libvt.mpi.a
>> > -rw-r--r-- 1 root root 464018 2012-01-13 19:43 libvt.omp.a
>> > -rw-r--r-- 1 root root 648332 2012-01-13 19:43 libvt.ompi.a
>> > -rwxr-xr-x 1 root root 298734 2012-01-13 19:43 mpi.mod
>> > drwxr-xr-x 2 root root 4096 2012-01-13 19:43 openmpi
>> > drwxrwsr-x 4 root staff 4096 2011-10-12 16:27 python2.7
>> >
>> > ~ > ll /usr/local/include/
>> > total 176
>> > drwxr-xr-x 5 root root 4096 2012-01-13 19:43 .
>> > drwxr-xr-x 10 root root 4096 2011-10-12 16:26 ..
>> > -rw-r--r-- 1 root root 19406 2012-01-13 19:42 mpif-common.h
>> > -rw-r--r-- 1 root root 3733 2012-01-13 19:43 mpif-config.h
>> > -rw-r--r-- 1 root root 3699 2012-01-13 19:43 mpif.h
>> > -rw-r--r-- 1 root root 3846 2012-01-13 19:42 mpif-mpi-io.h
>> > -rw-r--r-- 1 root root 110611 2012-01-13 19:43 mpi.h
>> > drwxr-xr-x 5 root root 4096 2012-01-13 19:43 openmpi
>> > drwxr-xr-x 2 root root 4096 2012-01-06 11:42 pcap
>> > -rw-r--r-- 1 root root 2393 2012-01-06 11:42 pcap-bpf.h
>> > -rw-r--r-- 1 root root 2320 2012-01-06 11:42 pcap.h
>> > -rw-r--r-- 1 root root 2125 2012-01-06 11:42 pcap-namedb.h
>> > drwxr-xr-x 2 root root 4096 2012-01-13 19:43 vampirtrace
>> >
>> >> Date: Mon, 16 Jan 2012 07:48:32 +0100
>> >> From: denis.davydov@xxxxxxxxxxxxxxxxxxx
>> >> To: fh_p@xxxxxxxxxxx; ptp-user@xxxxxxxxxxx
>> >> Subject: RE: [ptp-user] Resource Manager hanging and PTP Server
>> > compiling problems
>> >>
>> >> Dear Mr. Houssen,
>> >>
>> >> Thank you for your reply.
>> >> 1) I have Open MPI (openmpi-bin) together with developer headers
>> >> (libopenmpi-dev)
>> >> installed in Synaptic Package Manager.
>> >> I guess if I don't not have it, I won't be able to compile
> because
>> > of
>> >> including mpi.h.
>> >> Another thing is that Resource Manager actually starts fine and
> is
>> >> "green".
>> >>
>> >> Strange enough I end up with /bin/sdm/ executable even though I
> have
>> >
>> >> some building problems.
>> >>
>> >> Kind regards,
>> >> Denis.
>> >>
>> >> On 16.01.2012 00:12, Franck Houssen wrote:
>> >> > Hello,
>> >> >
>> >> > 1) to enable debugging, you must first build and install
> OpenMPI :
>> >> > configure must be done with --with-devel-headers. Then "sh
> BUILD"
>> > in
>> >> > org.eclipse.ptp.linux.x86_64_xxx should be OK and you will end
> up
>> >> > with
>> >> > ./bin/sdm.
>> >> > 2) I guess that when 1) will be OK, 2) should be OK too
>> >> >
>> >> > I use also Ubuntu 11.10 : running and debugging is OK for me =>
>> >> > http://www.eclipse.org/ptp/docs/releases/release-1.1.php [1]
>> >> >
>> >> > Hope it helps...
>> >> >
>> >> > FH
>> >> >
>> >> >> Date: Sun, 15 Jan 2012 16:23:34 +0100
>> >> >> From: denis.davydov@xxxxxxxxxxxxxxxxxxx
>> >> >> To: ptp-user@xxxxxxxxxxx
>> >> >> Subject: [ptp-user] Resource Manager hanging and PTP Server
>> >> > compiling problems
>> >> >>
>> >> >> Dear users,
>> >> >>
>> >> >> I'm using Ubuntu 11.10 (64bit) and recently switched to
> Eclipse
>> > PTP
>> >> > 5.0
>> >> >> (from NetBeans)
>> >> >> in order to be able to debug MPI.
>> >> >>
>> >> >> I have two problems I could not find an answer to:
>> >> >>
>> >> >> 1) When I build PTP Server Components
>> >> >> org.eclipse.ptp.linux.x86_64_5.0.4.201111121445
>> >> >>
>> >> >> I have the following error:
>> >> >>
>> >> >> checking build system type... x86_64-unknown-linux-gnu
>> >> >> configure: line 2275: 0: command not found
>> >> >> configure: error: The top installation directory of SLURM rms
>> > must
>> >> >> be specified via "--with-slurm=DIR".
>> >> >>
>> >> >> Do I need to have SLRUM installed in order to be able to use
>> >> > Parallel
>> >> >> Debugging ?
>> >> >> Nevertheless, I have SDM executable built in bin folder which
> I
>> > try
>> >> > to
>> >> >> use to debug.
>> >> >>
>> >> >>
>> >> >> 2) I added Local OpenMPI resource manager with default
> settings.
>> >> >>
>> >> >> but when I try to debug "MPI Hello World" (C executable
> project)
>> >> >> debugger hangs on
>> >> >>
>> >> >> MPI_Init(&argc, &argv);
>> >> >>
>> >> >> trying to Open MPI Job. Same happens when I debug my own
> project.
>> >> >>
>> >> >> Am I missing something?
>> >> >>
>> >> >>
>> >> >> Thank you in advance,
>> >> >>
>> >> >> Kind regards,
>> >> >> Denis.
>> >> >>
>> >> >>
>> >> >> _______________________________________________
>> >> >> ptp-user mailing list
>> >> >> ptp-user@xxxxxxxxxxx
>> >> >> https://dev.eclipse.org/mailman/listinfo/ptp-user
>> >> >
>> >> >
>> >> > Links:
>> >> > ------
>> >> > [1] http://www.eclipse.org/ptp/docs/releases/release-1.1.php
>> >>
>> >> --
>> >> ----------------------------------------
>> >> Advanced School
>> >> Molecular and Continuum Modelling of Polymers:
>> >> Molecular Dynamics Meets Finite Elements
>> >> Organizers: S. Reese, Ch. Holm, P. Steinmann
>> >> March 12-14, 2012
>> >> Pommersfelden, Schloss Weissenstein (Germany)
>> >> http://www.ltm.uni-erlangen.de/mcmp.html
>> >> ----------------------------------------
>> >> ----------------
>> >> Dr. Mgr. Denis Davydov
>> >>
>> >> Lehrstuhl für Technische Mechanik
>> >> Universität Erlangen-Nürnberg
>> >> Egerlandstraße 5
>> >> D-91058 Erlangen
>> >>
>> >> mailto: denis.davydov@xxxxxxxxxxxxxxxxxxx
>> >> www: http://www.ltm.uni-erlangen.de
>>
>> --
>> ----------------------------------------
>> Advanced School
>> Molecular and Continuum Modelling of Polymers:
>> Molecular Dynamics Meets Finite Elements
>> Organizers: S. Reese, Ch. Holm, P. Steinmann
>> March 12-14, 2012
>> Pommersfelden, Schloss Weissenstein (Germany)
>> http://www.ltm.uni-erlangen.de/mcmp.html
>> ----------------------------------------
>> ----------------
>> Dr. Mgr. Denis Davydov
>>
>> Lehrstuhl für Technische Mechanik
>> Universität Erlangen-Nürnberg
>> Egerlandstraße 5
>> D-91058 Erlangen
>>
>> mailto: denis.davydov@xxxxxxxxxxxxxxxxxxx
>> www: http://www.ltm.uni-erlangen.de

-- 
----------------------------------------
Advanced School
Molecular and Continuum Modelling of Polymers:
Molecular Dynamics Meets Finite Elements
Organizers: S. Reese, Ch. Holm, P. Steinmann
March 12-14, 2012
Pommersfelden, Schloss Weissenstein (Germany)
http://www.ltm.uni-erlangen.de/mcmp.html
----------------------------------------
----------------
Dr. Mgr. Denis Davydov

Lehrstuhl für Technische Mechanik
Universität Erlangen-Nürnberg
Egerlandstraße 5
D-91058 Erlangen

mailto: denis.davydov@xxxxxxxxxxxxxxxxxxx
www:    http://www.ltm.uni-erlangen.de
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