Re: [ptp-user] PBS Legacy RM Job Hanging

["Albert L. Rossi" <arossi@xxxxxxxxxxxxx>]

Wyatt, 

by legacy, I assume you mean 4.0 (Helios).

I imagine this is some proxy issue (like maybe not parsing the submit lines and being able to send a JobStatusChanged event -- I think that's the old protocol).

Is there some reason why you need to use 4.0?  It has been deprecated and I don't believe we are going to put any further effort into bug fixes for it ...

Cheers,

Al
----- Wyatt Spear <wspear@xxxxxxxxxxxxxx> wrote:
> Greetings,
> 
> I'm trying to launch a job using the PBS Legacy Resource Manager.  It
> detects the relevant nodes and the script it generates works correctly when
> turned into a file and submitted with qsub on the command line.  However
> when I attempt to run the job in Eclipse it hangs and has to be canceled.
> 
> 
> The progress view has two tasks when it stops advancing
> 
> "Remote Tools DStore Server (mist)" has its progress bar full and says
> "Server running, cancel to terminate".
> 
> The next task
> "Launching ReallyRemoteC"
> has its progress bar about 4/5 full and is stuck on the status "Initializing
> remote services: Remote Tools: Submitting the job"
> 
> I don't think it's a network problem because I can launch jobs using the
> OpenMPI resource manager over the same Remote Tools connection.  The console
> output is pasted below.
> 
> Thanks,
> Wyatt Spear
> 
> 
> !ENTRY org.eclipse.ptp.remote.core 4 0 2011-06-20 15:14:19.112
> !MESSAGE Remote Tools DStore Server: Server running on: mist.cs.uoregon.edu
> [NewRemoteC, /mnt/netapp/home1/wspear/RemoteWorkspace/ReallyRemoteC, [],
> true,
> #!/bin/bash\n\n#####################################################################\n##\sTemplate\sfor\sPBS\sBatch\sScript\sGenerated\sby\sPBS\sResource\sManager\n##\s\n##\sThis\stemplate\scontains\sall\sthe\sJob\sAttributes\srecognized\sas\svalid\n##\sby\sa\sgiven\sPBS\sproxy\sinstance.\n##\s\n##\sPlaceholders\s(@NAME@
> )\sare\sincluded\sfor\sthe\sPBS\sJob\sAttribute\s\n##\snames\sas\sspecified\sby\sqsub,\splus\sthe\sfollowing\sinternal\svariables:\n##\n##\s-\senv\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s:\splace\sfor\sdefining\sextra\senvironment\n##\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\svariables\s(NB:\sshould\snot\sbe\sremoved)\n##\s-\sprependedBash\s\s\s\s\s\s\s\s\s\s\s:\sdynamically\schange\sarbitrary\sbash\s\n##\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\scommands\swhich\sshould\sprecede\sthe\s\n##\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\sexecution\sof\sthe\smain\sapplication\scode\n##\s-\smpiCommand\smpiOptions\s\s\s:\srun\sunder\sMPI\n##\s-\sexecutablePath\sprogArgs\s:\sthe\sactual\sapplication\n##\s-\spostpendedBash\s\s\s\s\s\s\s\s\s\s:\sdynamically\schange\sarbitrary\sbash\s\n##\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\scommands\swhich\sshould\sfollow\sthe\s\n##\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\sexecution\sof\sthe\smain\sapplication\scode\n##\n##\sA\stemplate\scan\salso\sdirectly\scontain\sarbitrary\sshell\sscripting\s(not\s\n##\sto\sbe\sreplaced\svia\sthe\s'prepended'\sand\s'postpended'\splaceholders);\n##\sthese\slines\swill\sremain\sfixed\sand\swill\snot\sbe\sexposed\sthrough\n##\sthe\sLaunch\sTab\sfor\smodification\s(they\scan\showever\sbe\saltered\sby\s\n##\susing\sthe\sResource\sManager\sProperties\s"Edit"\sTab).\n##\n##\sNOTE:\sWe\sadvise\sremoving\seither\sthe\sncpus\sor\sthe\snodes\sresource,\n##\s\s\s\s\s\s\sdepending\son\sthe\sPBS\sconfiguration\s(nodes\sis\smore\scommon);\n##\s\s\s\s\s\s\sotherwise,\sthe\scorrect\svalue\smust\sbe\sset\son\sboth\sredundantly\n##\s\s\s\s\s\s\sin\sorder\sfor\sthe\sMPI\scomputation\sto\sbe\scorrect\s(and\s\n##\s\s\s\s\s\s\ssome\ssystems\smight\sreject\sa\sscript\swith\sboth\sset).\n#####################################################################\n#PBS\s-q\smist\n#PBS\s-N\sETest\n#PBS\s-l\sncpus=8\n#PBS\s-l\snodes=1:ppn=8\n#PBS\s-l\swalltime=00:30:00\n#PBS\s-V\s\n\ncd\s/mnt/netapp/home1/wspear/RemoteWorkspace/ReallyRemoteC\nmpiexec\s-n\s8\s/mnt/netapp/home1/wspear/RemoteWorkspace/ReallyRemoteC/NewRemoteC\s\n\n]
> 
> !ENTRY org.eclipse.ptp.remote.core 4 0 2011-06-20 15:33:02.048
> !MESSAGE Remote Tools DStore Server: DStore Server Starting...
> 
> !ENTRY org.eclipse.ptp.remote.core 4 0 2011-06-20 15:33:02.252
> !MESSAGE Remote Tools DStore Server: Server Started Successfully
> 
> !ENTRY org.eclipse.ptp.remote.core 4 0 2011-06-20 15:33:02.252
> !MESSAGE Remote Tools DStore Server: 43871
> 
> !ENTRY org.eclipse.ptp.remote.core 4 0 2011-06-20 15:33:02.498
> !MESSAGE Remote Tools DStore Server: Server running on: mist.cs.uoregon.edu