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[ptp-user] PBS Legacy RM Job Hanging
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Greetings,
I'm trying to launch a job using the PBS Legacy Resource Manager. It detects the relevant nodes and the script it generates works correctly when turned into a file and submitted with qsub on the command line. However when I attempt to run the job in Eclipse it hangs and has to be canceled.
The progress view has two tasks when it stops advancing
"Remote Tools DStore Server (mist)" has its progress bar full and says "Server running, cancel to terminate".
The next task
"Launching ReallyRemoteC"
has its progress bar about 4/5 full and is stuck on the status "Initializing remote services: Remote Tools: Submitting the job"
I don't think it's a network problem because I can launch jobs using the OpenMPI resource manager over the same Remote Tools connection. The console output is pasted below.
Thanks,
Wyatt Spear
!ENTRY org.eclipse.ptp.remote.core 4 0 2011-06-20 15:14:19.112
[NewRemoteC, /mnt/netapp/home1/wspear/RemoteWorkspace/ReallyRemoteC, [], true, #!/bin/bash\n\n#####################################################################\n##\sTemplate\sfor\sPBS\sBatch\sScript\sGenerated\sby\sPBS\sResource\sManager\n##\s\n##\sThis\stemplate\scontains\sall\sthe\sJob\sAttributes\srecognized\sas\svalid\n##\sby\sa\sgiven\sPBS\sproxy\sinstance.\n##\s\n##\sPlaceholders\s(@NAME@)\sare\sincluded\sfor\sthe\sPBS\sJob\sAttribute\s\n##\snames\sas\sspecified\sby\sqsub,\splus\sthe\sfollowing\sinternal\svariables:\n##\n##\s-\senv\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s:\splace\sfor\sdefining\sextra\senvironment\n##\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\svariables\s(NB:\sshould\snot\sbe\sremoved)\n##\s-\sprependedBash\s\s\s\s\s\s\s\s\s\s\s:\sdynamically\schange\sarbitrary\sbash\s\n##\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\scommands\swhich\sshould\sprecede\sthe\s\n##\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\sexecution\sof\sthe\smain\sapplication\scode\n##\s-\smpiCommand\smpiOptions\s\s\s:\srun\sunder\sMPI\n##\s-\sexecutablePath\sprogArgs\s:\sthe\sactual\sapplication\n##\s-\spostpendedBash\s\s\s\s\s\s\s\s\s\s:\sdynamically\schange\sarbitrary\sbash\s\n##\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\scommands\swhich\sshould\sfollow\sthe\s\n##\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\s\sexecution\sof\sthe\smain\sapplication\scode\n##\n##\sA\stemplate\scan\salso\sdirectly\scontain\sarbitrary\sshell\sscripting\s(not\s\n##\sto\sbe\sreplaced\svia\sthe\s'prepended'\sand\s'postpended'\splaceholders);\n##\sthese\slines\swill\sremain\sfixed\sand\swill\snot\sbe\sexposed\sthrough\n##\sthe\sLaunch\sTab\sfor\smodification\s(they\scan\showever\sbe\saltered\sby\s\n##\susing\sthe\sResource\sManager\sProperties\s"Edit"\sTab).\n##\n##\sNOTE:\sWe\sadvise\sremoving\seither\sthe\sncpus\sor\sthe\snodes\sresource,\n##\s\s\s\s\s\s\sdepending\son\sthe\sPBS\sconfiguration\s(nodes\sis\smore\scommon);\n##\s\s\s\s\s\s\sotherwise,\sthe\scorrect\svalue\smust\sbe\sset\son\sboth\sredundantly\n##\s\s\s\s\s\s\sin\sorder\sfor\sthe\sMPI\scomputation\sto\sbe\scorrect\s(and\s\n##\s\s\s\s\s\s\ssome\ssystems\smight\sreject\sa\sscript\swith\sboth\sset).\n#####################################################################\n#PBS\s-q\smist\n#PBS\s-N\sETest\n#PBS\s-l\sncpus=8\n#PBS\s-l\snodes=1:ppn=8\n#PBS\s-l\swalltime=00:30:00\n#PBS\s-V\s\n\ncd\s/mnt/netapp/home1/wspear/RemoteWorkspace/ReallyRemoteC\nmpiexec\s-n\s8\s/mnt/netapp/home1/wspear/RemoteWorkspace/ReallyRemoteC/NewRemoteC\s\n\n]
!ENTRY org.eclipse.ptp.remote.core 4 0 2011-06-20 15:33:02.048
!MESSAGE Remote Tools DStore Server: DStore Server Starting...
!ENTRY org.eclipse.ptp.remote.core 4 0 2011-06-20 15:33:02.252
!MESSAGE Remote Tools DStore Server: Server Started Successfully
!ENTRY org.eclipse.ptp.remote.core 4 0 2011-06-20 15:33:02.252
!MESSAGE Remote Tools DStore Server: 43871
!ENTRY org.eclipse.ptp.remote.core 4 0 2011-06-20 15:33:02.498
