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I noticed that if you provide a class in both source and binary form (on the inpath), ajc does not warn. When outputting to a directory, ajc completes normally (presumably the last .class wins). When outputting to a .jar file, ajc throws an exception saying the entry already exists. This is a user error that it would be nice to detect and error in both cases, as we do for duplicate entries in source form.
scheduling for investigation in m4...
won't hold 1.5.0 for this, moving to 1.5.1