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Exporting a product (where some plugins are coming from the target) is not working today because the archive is created in multiple steps and antTar does not have an "append" mode (like the tar has, or like antZip has). The resulting jar contains only the jars that are coming from the target since instead of appending, antTar delete the existing file.
A solution might be to use refIds. For example, the assemble script could declare one refId, and the package script would then use this refId in the call it does to tar or zip.
This is really the same as 142792 *** This bug has been marked as a duplicate of bug 142792 ***