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I couldn't find instructions on how to install the zip file of the oprofile feature on the downloads page, and the obvious thing to try (unzipping it in my eclipse installation directory) had no effect, so I gave up on that and built from CVS instead. The CVS code built successfully, after I had installed the CDT SDK feature, but it failed to start in a test workbench, with "Unknown Error". (It also said OPROFILE was not compiled into my kernel, which is not true. modprobe oprofile works.)
The new installation scripts address this issue. See http://dev.eclipse.org/viewcvs/index.cgi/%7Echeckout%7E/org.eclipse.cdt-contrib/org.eclipse.cdt.oprofile-home/downloads.html?cvsroot=Tools_Project for installation instructions. Also, note that you need to be running an SMP kernel to use OProfile (running an SMP kernel on a UP machine is OK).