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I add the AJDT nature to an existing Java project, and open its properties from the Package explorer view. Then I see the Java Build Path page appears twice. I use Eclipse 3.0.1 and Java 1.5
Created attachment 18136 [details] Screenshot
I have seen this happen before, but not recently. I'm therefore going to assume it is fixed in AJDT 1.2 onwards. If you see it again with those AJDT versions, please reopen.