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It's nice that there's now a default type for AspectJ problems. However, in upgrading from 1.1.10 to 1.1.11, the setting for this was not enabled. I don't know if there's any way to enable it by default on upgrade, but it would be nice to do so. Definitely this should be part of the code that runs to first configure AspectJ.
This happens because the Problem View does not automatically update its filter properties when new types of error markers are added. We could access the problem view filter properties and change them to include our problem markers. Fixed as follows: when AspectJPlugin detects a version change, it checks if the ajdt problem markers get filtered. If yes, it changes the according property of the problem view.
Fixed by Luzius.