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Build 20011117. Bug 5834 was caused by missing project references (not reflecting classpath relationships). Support for updating references is in, but on the #setRawClasspath path, it does not seem to be involved (though it does on other pathes).
Fixed
*** Bug 6070 has been marked as a duplicate of this bug. ***
removed the project updating code in BuildPathBlock. Algorithm in JCore not working correctly, see 6100.