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The "ajdoc.bat" file should work when plugged into the "Project -> Generate Javadoc..." menu as a Javadoc command. At this time the problem is that ajdoc does not accept the temporary arguments file that Eclipse uses.
To run from our tree in bootstrap mode use something like the batch script below. To run from AJDT point Eclipse at this command under the "Project -> Generate Javadoc" menu. End users will be able to point at the "<aj-install- dir>/bin/ajdoc.bat". --------- @echo off "%JAVA_HOME%\bin\java" -classpath "C:\Dev\workspace- aspectj\ajdoc\bin;C:\Dev\workspace-aspectj\asm\bin;C:\Dev\workspace- aspectj\bridge\bin;C:\Dev\workspace-aspectj\weaver\bin;C:\Dev\workspace- aspectj\util\bin;C:\Dev\workspace-aspectj\org.eclipse.jdt.core\jdtcore-for- aspectj.jar;C:\Dev\workspace-aspectj\lib\bcel\bcel.jar;C:\Dev\workspace- aspectj\org.aspectj.ajdt.core\bin;C:\Dev\workspace-aspectj\aj- build\dist\tools\lib\aspectjrt.jar;%CLASSPATH%" -Xmx64M org.aspectj.tools.ajdoc.Main %1 %2 %3 %4 %5 %6 %7 %8 %9