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See https://download.eclipse.org/oomph/archive/p2-index/modeling.sirius.html and https://www.eclipse.org/lists/cross-project-issues-dev/msg17191.html At the moment, we have 62 erroneous repos. All are nightlies, most from old and unmaintained branches (so they could be simply removed). All seem to be related to the way the publication script sets up "shortcuts" repos (e.g. nightly/6.0.x -> nightly/6.0.1 -> nightly/6.0.1-NYYYY-MM-DD) and sub-repos.
Done. No more errors detected at https://download.eclipse.org/oomph/archive/p2-index/modeling.sirius.html as of today.
Available in Sirius 6.3.1 (part of Eclipse 2020-06). See https://wiki.eclipse.org/Sirius/6.3.1 for details on the release.