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Either fix the class file deleting etc. to work with jars, or always do a batch build when working with outjars.
zip files don't support adding or updating files in an existing jar (you need to take a copy and move everything across). This can be done, but is a bit of work. I'm reluctant to do it because the test harness does not support both incremental and outjar at the same time (and it was getting too difficult to make it work effectively) so I can't write a good test suite around it. Therefore for 1.2 I've added a simple test in AjState.prepareForNextBuild() that returns false (can't do incremental) if an outjar is specified. This ensures that results are at least always correct. We can do better post 1.2 when we have more time to update the test harness.
updating target flag to indicate inclusion in 1.2 release.