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Using master. 1. Create those two files in an empty project: header.h: <empty> source.cpp: #include "header.h" 2. Right-click on source.cpp, Show in, Include Browser 3. Make sure the view is in mode "Show Files Includes" (toolbar button). You should see a tree containing source.cpp header.h 4. Delete header.h 5. Press the refresh button in the Include Browser: The include relationship is still there. 6. Edit source.cpp to remove the #include line and refresh the view again: The include relationship is still there. It seems that there could be a flaw in the PDOM code when a file is deleted, the include relationship is not removed.