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The repository clean command silently ignores exceptions instead of showing an error dialog. Please show an error, since following git operations can be very confusing, if those "cleaned" files are suddenly again in the staging area. Copy of a related entry in my error log: org.eclipse.egit.ui Error Tue Jul 18 16:15:22 CEST 2017 Unexpected exception while cleaning org.eclipse.jgit.api.errors.JGitInternalException: Could not delete file D:\development\esdl\git\project33\tests\com.etas.arxml2esdl.map.tests\target at org.eclipse.jgit.api.CleanCommand.call(CleanCommand.java:137) at org.eclipse.egit.ui.internal.clean.CleanRepositoryPage$9.run(CleanRepositoryPage.java:271) at org.eclipse.jface.operation.ModalContext$ModalContextThread.run(ModalContext.java:119) Caused by: java.io.IOException: Could not delete file D:\development\esdl\git\project33\tests\com.etas.arxml2esdl.map.tests\target at org.eclipse.jgit.util.FileUtils.delete(FileUtils.java:198) at org.eclipse.jgit.api.CleanCommand.cleanPath(CleanCommand.java:184) at org.eclipse.jgit.api.CleanCommand.call(CleanCommand.java:134) ... 2 more
New Gerrit change created: https://git.eclipse.org/r/103990