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Queries are copied from m to p, but references to them are not. Looks as if QVTmToQVTiPartition.etl post which currently does: fixReferences(QVTp!VariableExp.all()); needs a fixer for OperationCallExp.all() too, but I do not understand why fixReferences uses name searching rather than "equivalent". Perhaps it is because Variables are EcoreUtil.copied rather than transformed so the transformation equivalences are missing. But in that case the EcoreUtil.copy mapping should be used...
Fixed by the Java rewrite pushed to master for M5. (Worked around by the new scheduler.)