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In some circumstances it seems like the Synchronize View is not updated after commit. For instance, it just happened that I committed a folder containing an only deleted file (I used the right-click -> Delete action in Eclipse, hence the deletion was in the Index). The commit was performed from the Synchronize View itself. After commit, the Synchronize View was not updated (the outgoing change is still there...), but if I type "git status" (or "git log") from the command line I see that the change was actually committed.