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Build 3.0 M4 We could use sets in the IncrementalJavaBuilder qualifiedStrings/simpleStrings) collections. Also there are APIs to add which answer true only if not present already (if using sets, this is exactly what you would want). This is in IncrementalImageBuilder#addDependentsOf Offending scenario is a manual rebuild of one project followed by workspace incremental rebuilt. Lots of names are accumulated during the indictment process.
Should be backported to 2.1 stream when fix is available.
Made the changes but did not see an improvement rebuilding core.runtime followed by an incremental build of the rest of the workspace (full source Eclipse workspace). Changed IncrementalImageBuilder and ReferenceCollection. Added StringSet.
Verified.