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I create a new extension in the Plug-in Manifest Editor and click on the 'class' property in the Properties view to open the 'Java Attribute Editor' to enter the class definition. In this dialog the 'Use an existing Java class' radio button is selected by default. Then I select the 'browse' to select an existing class, and suddenly the other radiobutton 'Generate a new Java class' gets selected. This only happens once in an eclipse instance. Next time Eclipse is restarted it will happen again.
Already fixed in the 3.0 stream.