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On session closure, if a resource is unaccessible it causes unexpected exception that need to be handled.
Fixed with gerrit https://git.eclipse.org/r/#/c/41093/
Fix has been committed
Verified as technical issue
Scenario used to test: * create a modeling project * add an ecore file as semantic resource and make a class diagramm on root package * delete ecore file on file system * close project nothing happen in error log
Available in Sirius 3.0.0. See https://wiki.eclipse.org/Sirius/3.0.0.