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Enhancement request to add the support for orphan local branches creation, in Egit (I don't know where JGit stands on this feature, but it might need upgrades as well). From http://git-scm.com/docs/git-checkout: --orphan <new_branch> Create a new orphan branch, named <new_branch>, started from <start_point> and switch to it. The first commit made on this new branch will have no parents and it will be the root of a new history totally disconnected from all the other branches and commits. The index and the working tree are adjusted as if you had previously run "git checkout <start_point>". This allows you to start a new history that records a set of paths similar to <start_point> by easily running "git commit -a" to make the root commit. This can be useful when you want to publish the tree from a commit without exposing its full history. You might want to do this to publish an open source branch of a project whose current tree is "clean", but whose full history contains proprietary or otherwise encumbered bits of code. If you want to start a disconnected history that records a set of paths that is totally different from the one of <start_point>, then you should clear the index and the working tree right after creating the orphan branch by running "git rm -rf ." from the top level of the working tree. Afterwards you will be ready to prepare your new files, repopulating the working tree, by copying them from elsewhere, extracting a tarball, etc. The idea would be to support a "null" source in the "new branch" window, and maybe a check box to "git rm -rf" everything on this new branch.