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ATL doesn't switch perspective when a breakpoint is hit so it is easy to think nothing happened. So if I'm in the ATL perspective when I run the configuration the Debug perspective will *not* pop up.
Fix committed in http://git.eclipse.org/c/mmt/org.eclipse.atl.git/commit/?id=191039ef32c208e38f5072e0161a15495ddd6903
Integrated in v4.0.0.v201710161238 https://hudson.eclipse.org/shared/view/Modeling/job/mmt-atl-master/391/
Bad fix caused https://bugs.eclipse.org/bugs/show_bug.cgi?id=528724
Switching to debug perspective should follow the global Eclipse Run/Debug preferences. It should trigger automatically, i.e. no extra code involved.