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In the documentation about layout, we does not document that algorithms (Top-Down/Down-Top/Left-Right) concerns only nodes connected by edges.
https://git.eclipse.org/r/19421 change has been submitted.
"NOTE: these layout algorithms manage only nodes connected by edges, other nodes are layouted from left to right as usual." has been added in the documentation about layout in the diagram section.
Verified on 0.9.0.201312100846 build.
Released in Sirius 0.9.0