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In the 'Source Folder Selection' dialog press the 'Create new Folder..' and 'Advanced' to create a folder linked to an external location. This folder has .java files. Compile, notice that the .class files that correspond to the .java files in the external location were compiled to the external location and not the output directory specified in .classpath.
Unable to reproduce. The .class files showed up in the bin directory. Can you please list exactly the steps needed to reproduce this? As well as including the .classpath file of the project. thanks
Reopen if you reproduceable steps. thanks