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On the JREs preference page the only way you can tell if a JRE is contributed is if you select it and the 'Delete' button disables or you noticed the '(locked)' text in the label - which should probably be changed to '(contributed)'. We should colour it the same way we do on other pages that show items that have been contributed - for example entries on the Classpath Variable page.
Pushed fix to: http://git.eclipse.org/c/jdt/eclipse.jdt.debug.git/commit/?id=acca93ce0fcdafbbd07686744ec9fb157dd2a76e